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ome-zarr-py

Tools for multi-resolution images stored in Zarr filesets, according to the OME NGFF spec.

See Documentation for usage information.

Documentation

Documentation will be automatically built with readthedocs.

It can be built locally with:

$ pip install -r docs/requirements.txt
$ sphinx-build -b html docs/source/ docs/build/html

Tests

Tests can be run locally via tox with:

$ pip install tox
$ tox

To enable pre-commit code validation:

$ pip install pre-commit
$ pre-commit install

Release process

This repository uses setuptools_scm to manage version numbers.

Go to https://github.com/ome/ome-zarr-py/releases and click on Draft a new release.

Under Choose a tag, type the new version number (e.g. 0.1.0) and choose Create a new tag on publish from the dropdown.

Click on Generate release notes to create a changelog and Publish release to publish the release.

License

Distributed under the terms of the BSD license, "ome-zarr-py" is free and open source software

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Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

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  • Python 100.0%