feat: Add competing risks models and enhance data visualization #13

	name: CI

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]

	jobs:
	test:
	name: Test with Python ${{ matrix.python-version }}
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.9", "3.10", "3.11"]

	steps:
	- name: Checkout code
	uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install Poetry
	run: \|
	curl -sSL https://install.python-poetry.org \| python3 -
	echo "$HOME/.local/bin" >> $GITHUB_PATH

	- name: Install dependencies
	run: poetry install

	- name: Run tests with coverage
	run: poetry run pytest --cov=gen_surv --cov-report=xml --cov-report=term

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v5
	with:
	files: coverage.xml
	token: ${{ secrets.CODECOV_TOKEN }} # optional if public repo

	lint:
	name: Code Quality
	runs-on: ubuntu-latest

	steps:
	- name: Checkout code
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Install Poetry
	run: \|
	curl -sSL https://install.python-poetry.org \| python3 -
	echo "$HOME/.local/bin" >> $GITHUB_PATH

	- name: Install dependencies
	run: poetry install

	- name: Run black
	run: poetry run black --check gen_surv tests examples

	- name: Run isort
	run: poetry run isort --check gen_surv tests examples

	- name: Run flake8
	run: poetry run flake8 gen_surv tests examples

	- name: Run mypy
	run: poetry run mypy gen_surv

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