chore: tighten tooling and fix visualization #21
Workflow file for this run
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| name: CI | ||
| on: | ||
| push: | ||
| branches: [main] | ||
| pull_request: | ||
| branches: [main] | ||
| jobs: | ||
| test: | ||
| name: Test with Python ${{ matrix.python-version }} | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python-version: ["3.10", "3.11", "3.12"] | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v4 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Cache Poetry dependencies | ||
| uses: actions/cache@v4 | ||
| with: | ||
| path: ~/.cache/pypoetry | ||
| key: ${{ runner.os }}-poetry-${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }} | ||
| - name: Install Poetry | ||
| run: | | ||
| curl -sSL https://install.python-poetry.org | python3 - | ||
| echo "$HOME/.local/bin" >> $GITHUB_PATH | ||
| - name: Install dependencies | ||
| run: poetry install --with dev | ||
| - name: Run tests with coverage | ||
| run: poetry run pytest --cov=gen_surv --cov-report=xml --cov-report=term | ||
| - name: Upload coverage to Codecov | ||
| uses: codecov/codecov-action@v5 | ||
| with: | ||
| files: coverage.xml | ||
| token: ${{ secrets.CODECOV_TOKEN }} # optional if public repo | ||
| lint: | ||
| name: Code Quality | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v4 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: "3.11" | ||
| - name: Cache Poetry dependencies | ||
| uses: actions/cache@v4 | ||
| with: | ||
| path: ~/.cache/pypoetry | ||
| key: ${{ runner.os }}-poetry-3.11-${{ hashFiles('**/poetry.lock') }} | ||
| - name: Install Poetry | ||
| run: | | ||
| curl -sSL https://install.python-poetry.org | python3 - | ||
| echo "$HOME/.local/bin" >> $GITHUB_PATH | ||
| - name: Install dependencies | ||
| run: poetry install --with dev --no-root | ||
| - name: Run pre-commit checks | ||
| run: poetry run pre-commit run --all-files | ||
