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Reverts #78

@DiogoRibeiro7 DiogoRibeiro7 merged commit f11fe25 into main Aug 8, 2025
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@DiogoRibeiro7 DiogoRibeiro7 deleted the revert-78-feat/remove-ignore_errors-in-mypy-settings branch August 8, 2025 13:50
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codecov bot commented Aug 8, 2025

Codecov Report

❌ Patch coverage is 80.85106% with 36 lines in your changes missing coverage. Please review.

Files with missing lines Patch % Lines
gen_surv/validate.py 60.71% 33 Missing ⚠️
gen_surv/aft.py 72.72% 3 Missing ⚠️

📢 Thoughts on this report? Let us know!

DiogoRibeiro7 added a commit that referenced this pull request Aug 8, 2025
* Feat/remove ignore errors in mypy settings (#78)

* feat: Add competing risks models and enhance data visualization

* feat: Add competing risks models and enhance data visualization

* chore: fixes

* chore: fixes unit test

* chore: solve issues with formatting

* Add files via upload

* docs: update fix reference (#37)

* Add missing dependencies and configure quality tools (#39)

* feat: add dataset export utility (#41)

* Fix black formatting (#43)

* Add extensive summary tests (#45)

* Add visualization CLI tests (#47)

* Expand validate tests (#49)

* docs: rewrite README (#51)

* Increase test coverage (#52)

* Fix docs build and sort imports (#54)

* Add scikit-survival integration (#56)

* chore: finalize 1.0.9 release metadata (#58)

* refactor: unify error handling (#60)

* Feat/consolidate and optimize (#63)

* chore: tighten tooling and fix visualization

* docs: document Python 3.10 requirement

* ci: align workflow with review template

* feat: expose dev extras (#65)

* test: broaden competing risks coverage (#67)

* fix: ensure doc links and tag workflow (#69)

* ci: streamline coverage and install flags (#71)

* feat: share covariate utilities (#73)

* ci: separate manual pypi publish (#76)

* fix: tighten sequence checks and streamline competing-risk helpers

* Revert "Feat/remove ignore errors in mypy settings (#78)" (#80)

This reverts commit 3c799d0.

* Update version to 1.0.9

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
DiogoRibeiro7 added a commit that referenced this pull request Aug 9, 2025
* Feat/remove ignore errors in mypy settings (#78)

* feat: Add competing risks models and enhance data visualization

* feat: Add competing risks models and enhance data visualization

* chore: fixes

* chore: fixes unit test

* chore: solve issues with formatting

* Add files via upload

* docs: update fix reference (#37)

* Add missing dependencies and configure quality tools (#39)

* feat: add dataset export utility (#41)

* Fix black formatting (#43)

* Add extensive summary tests (#45)

* Add visualization CLI tests (#47)

* Expand validate tests (#49)

* docs: rewrite README (#51)

* Increase test coverage (#52)

* Fix docs build and sort imports (#54)

* Add scikit-survival integration (#56)

* chore: finalize 1.0.9 release metadata (#58)

* refactor: unify error handling (#60)

* Feat/consolidate and optimize (#63)

* chore: tighten tooling and fix visualization

* docs: document Python 3.10 requirement

* ci: align workflow with review template

* feat: expose dev extras (#65)

* test: broaden competing risks coverage (#67)

* fix: ensure doc links and tag workflow (#69)

* ci: streamline coverage and install flags (#71)

* feat: share covariate utilities (#73)

* ci: separate manual pypi publish (#76)

* fix: tighten sequence checks and streamline competing-risk helpers

* Revert "Feat/remove ignore errors in mypy settings (#78)" (#80)

This reverts commit 3c799d0.

* Update version to 1.0.9

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
DiogoRibeiro7 added a commit that referenced this pull request Aug 29, 2025
* feat: Add competing risks models and enhance data visualization

* feat: Add competing risks models and enhance data visualization

* chore: fixes

* chore: fixes unit test

* chore: solve issues with formatting

* Add files via upload

* docs: update fix reference (#37)

* Add missing dependencies and configure quality tools (#39)

* feat: add dataset export utility (#41)

* Fix black formatting (#43)

* Add extensive summary tests (#45)

* Add visualization CLI tests (#47)

* Expand validate tests (#49)

* docs: rewrite README (#51)

* Increase test coverage (#52)

* Fix docs build and sort imports (#54)

* Add scikit-survival integration (#56)

* chore: finalize 1.0.9 release metadata (#58)

* refactor: unify error handling (#60)

* Feat/consolidate and optimize (#63)

* chore: tighten tooling and fix visualization

* docs: document Python 3.10 requirement

* ci: align workflow with review template

* feat: expose dev extras (#65)

* test: broaden competing risks coverage (#67)

* fix: ensure doc links and tag workflow (#69)

* ci: streamline coverage and install flags (#71)

* feat: share covariate utilities (#73)

* ci: separate manual pypi publish (#76)

* Revert 78 feat/remove ignore errors in mypy settings (#79)

* Feat/remove ignore errors in mypy settings (#78)

* feat: Add competing risks models and enhance data visualization

* feat: Add competing risks models and enhance data visualization

* chore: fixes

* chore: fixes unit test

* chore: solve issues with formatting

* Add files via upload

* docs: update fix reference (#37)

* Add missing dependencies and configure quality tools (#39)

* feat: add dataset export utility (#41)

* Fix black formatting (#43)

* Add extensive summary tests (#45)

* Add visualization CLI tests (#47)

* Expand validate tests (#49)

* docs: rewrite README (#51)

* Increase test coverage (#52)

* Fix docs build and sort imports (#54)

* Add scikit-survival integration (#56)

* chore: finalize 1.0.9 release metadata (#58)

* refactor: unify error handling (#60)

* Feat/consolidate and optimize (#63)

* chore: tighten tooling and fix visualization

* docs: document Python 3.10 requirement

* ci: align workflow with review template

* feat: expose dev extras (#65)

* test: broaden competing risks coverage (#67)

* fix: ensure doc links and tag workflow (#69)

* ci: streamline coverage and install flags (#71)

* feat: share covariate utilities (#73)

* ci: separate manual pypi publish (#76)

* fix: tighten sequence checks and streamline competing-risk helpers

* Revert "Feat/remove ignore errors in mypy settings (#78)"

This reverts commit 3c799d0.

* fix: tighten sequence checks and streamline competing-risk helpers (#81)

* Mege Main in to branch (#82)

* Feat/remove ignore errors in mypy settings (#78)

* feat: Add competing risks models and enhance data visualization

* feat: Add competing risks models and enhance data visualization

* chore: fixes

* chore: fixes unit test

* chore: solve issues with formatting

* Add files via upload

* docs: update fix reference (#37)

* Add missing dependencies and configure quality tools (#39)

* feat: add dataset export utility (#41)

* Fix black formatting (#43)

* Add extensive summary tests (#45)

* Add visualization CLI tests (#47)

* Expand validate tests (#49)

* docs: rewrite README (#51)

* Increase test coverage (#52)

* Fix docs build and sort imports (#54)

* Add scikit-survival integration (#56)

* chore: finalize 1.0.9 release metadata (#58)

* refactor: unify error handling (#60)

* Feat/consolidate and optimize (#63)

* chore: tighten tooling and fix visualization

* docs: document Python 3.10 requirement

* ci: align workflow with review template

* feat: expose dev extras (#65)

* test: broaden competing risks coverage (#67)

* fix: ensure doc links and tag workflow (#69)

* ci: streamline coverage and install flags (#71)

* feat: share covariate utilities (#73)

* ci: separate manual pypi publish (#76)

* fix: tighten sequence checks and streamline competing-risk helpers

* Revert "Feat/remove ignore errors in mypy settings (#78)" (#80)

This reverts commit 3c799d0.

* Update version to 1.0.9

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>

* chore: sync version and tidy changelog (#84)

* Merge main in to branch (#85)

* Feat/remove ignore errors in mypy settings (#78)

* feat: Add competing risks models and enhance data visualization

* feat: Add competing risks models and enhance data visualization

* chore: fixes

* chore: fixes unit test

* chore: solve issues with formatting

* Add files via upload

* docs: update fix reference (#37)

* Add missing dependencies and configure quality tools (#39)

* feat: add dataset export utility (#41)

* Fix black formatting (#43)

* Add extensive summary tests (#45)

* Add visualization CLI tests (#47)

* Expand validate tests (#49)

* docs: rewrite README (#51)

* Increase test coverage (#52)

* Fix docs build and sort imports (#54)

* Add scikit-survival integration (#56)

* chore: finalize 1.0.9 release metadata (#58)

* refactor: unify error handling (#60)

* Feat/consolidate and optimize (#63)

* chore: tighten tooling and fix visualization

* docs: document Python 3.10 requirement

* ci: align workflow with review template

* feat: expose dev extras (#65)

* test: broaden competing risks coverage (#67)

* fix: ensure doc links and tag workflow (#69)

* ci: streamline coverage and install flags (#71)

* feat: share covariate utilities (#73)

* ci: separate manual pypi publish (#76)

* fix: tighten sequence checks and streamline competing-risk helpers

* Revert "Feat/remove ignore errors in mypy settings (#78)" (#80)

This reverts commit 3c799d0.

* Update version to 1.0.9

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>

* Feat/add unit tests (#88)

* tests: remove regression baselines

* tests: add deterministic generation and visualize CLI integration

* docs: refresh readme (#90)

* fix: fix unit tests

* fix: fix type annotation

* fix: fix black and mypi issues

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
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2 participants