Skip to content

Added code to return BIN for top hits #35

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

gjdury
Copy link

@gjdury gjdury commented Jan 17, 2024

I modified jamp_hit.py in a way that is compatible (as far as I tested) with digger_hit when used with boldigger-cline. I did not test it with the GUI.

This version of jamp_hit.py assigns the best hit using the JAMP method applied to BIN as the lowest possible taxonomic level rather than species. So, while it doesn't explicitly check for multiple BINs, I don't know if that's really necessary in this implementation since a) at high similarities (≥98%) the results should all have the same BIN, and b) BIN is discarded from hits whose similarity is lower than 98%.

@OndroV OndroV mentioned this pull request Mar 22, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant