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joshuabmoorejoshuabmoore
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add Michael Small's Shannon Entropy C function + wrappers + verification on e1000
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‎pyhctsa/Configurations/entropy.yaml‎

Lines changed: 105 additions & 105 deletions
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Entropy:
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# DistributionEntropy:
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# base_name: DistributionEntropy
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# labels:
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# - entropy
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# dependencies:
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# - scipy
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# configs:
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# - histOrKS: 'ks'
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# numBins: [0.01, 0.1, 0.5, 1.0]
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# olremp: 0
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# zscore: True
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# - histOrKS: 'ks'
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# numBins: ''
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# olremp: [0.01, 0.02, 0.05, 0.1, 0.2, 0.3]
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# zscore: True
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# - histOrKS: 'hist'
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# numBins: [5, 10, 20, 50, 'sqrt', 'fd', 'sturges']
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# olremp: 0
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# zscore: True
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# - histOrKS: 'hist'
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# numBins: 10
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# olremp: [0.01, 0.02, 0.05, 0.1, 0.2, 0.3]
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# zscore: True
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# hctsa_name: EN_DistributionEntropy
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# ordered_args: ['histOrKS', 'numBins', 'olremp']
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DistributionEntropy:
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base_name: DistributionEntropy
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labels:
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- entropy
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dependencies:
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- scipy
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configs:
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- histOrKS: 'ks'
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numBins: [0.01, 0.1, 0.5, 1.0]
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olremp: 0
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zscore: True
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- histOrKS: 'ks'
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numBins: ''
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olremp: [0.01, 0.02, 0.05, 0.1, 0.2, 0.3]
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zscore: True
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- histOrKS: 'hist'
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numBins: [5, 10, 20, 50, 'sqrt', 'fd', 'sturges']
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olremp: 0
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zscore: True
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- histOrKS: 'hist'
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numBins: 10
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olremp: [0.01, 0.02, 0.05, 0.1, 0.2, 0.3]
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zscore: True
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hctsa_name: EN_DistributionEntropy
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ordered_args: ['histOrKS', 'numBins', 'olremp']
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# LZComplexity:
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# base_name: LZcomplexity
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# labels:
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# - entropy
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# - symbolic
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# dependencies:
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# configs:
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# - nbits: !range [2, 10]
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# preProc: [[], 'diff']
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# zscore: True
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# hctsa_name: EN_MS_LZcomplexity
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# ordered_args: ['nbits', 'preProc']
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LZComplexity:
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base_name: LZcomplexity
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labels:
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- entropy
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- symbolic
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dependencies:
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configs:
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- nbits: !range [2, 10]
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preProc: [[], 'diff']
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zscore: True
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hctsa_name: EN_MS_LZcomplexity
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ordered_args: ['nbits', 'preProc']
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# ComplexityInvariantDistance:
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# base_name: CID
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# labels:
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# - entropy
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# dependencies:
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# configs:
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# - zscore: True
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# hctsa_name: EN_CID
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ComplexityInvariantDistance:
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base_name: CID
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labels:
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- entropy
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dependencies:
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configs:
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- zscore: True
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hctsa_name: EN_CID
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# ApproximateEntropy:
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# base_name: ApEn
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# labels:
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# - entropy
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# dependencies:
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# configs:
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# - mnom: [1, 2]
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# rth: [0.1, 0.2]
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# zscore: True
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# hctsa_name: EN_ApEn
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# ordered_args: ['mnom', 'rth']
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ApproximateEntropy:
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base_name: ApEn
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labels:
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- entropy
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dependencies:
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configs:
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- mnom: [1, 2]
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rth: [0.1, 0.2]
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zscore: True
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hctsa_name: EN_ApEn
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ordered_args: ['mnom', 'rth']
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# RPDE:
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# base_name: rpde
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# labels:
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# - entropy
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# dependencies:
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# configs:
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# - m: 3
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# tau: 1
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# zscore: True
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# # - m: 3
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# # tau: 'ac'
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# # zscore: True
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# hctsa_name: EN_rpde
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# ordered_args: ['m', 'tau']
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RPDE:
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base_name: rpde
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labels:
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- entropy
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dependencies:
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configs:
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- m: 3
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tau: 1
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zscore: True
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# - m: 3
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# tau: 'ac'
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# zscore: True
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hctsa_name: EN_rpde
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ordered_args: ['m', 'tau']
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# SampleEntropy:
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# base_name: SampEn
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# labels:
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# - entropy
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# dependencies:
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# configs:
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# - M: 5
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# r: [0.05, 0.1, 0.15, 0.2, 0.3]
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# preProcessHow: ''
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# zscore: True
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# - M: 5
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# r: [0.1, 0.2]
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# preProcessHow: 'diff1'
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# zscore: True
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# hctsa_name: EN_SampEn
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# ordered_args: ['M', 'r', 'preProcessHow']
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SampleEntropy:
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base_name: SampEn
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labels:
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- entropy
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dependencies:
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configs:
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- M: 5
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r: [0.05, 0.1, 0.15, 0.2, 0.3]
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preProcessHow: ''
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zscore: True
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- M: 5
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r: [0.1, 0.2]
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preProcessHow: 'diff1'
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zscore: True
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hctsa_name: EN_SampEn
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ordered_args: ['M', 'r', 'preProcessHow']
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# MultiScaleEntropy:
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# base_name: mse
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# labels:
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# - entropy
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# - intensive
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# dependencies:
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# configs:
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# - scaleRange: [!range [1, 10]]
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# m: 2
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# r: 0.15
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# preProcessHow: ['diff1', 'rescale_tau']
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# zscore: True
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# - scaleRange: [!range [1, 10]]
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# m: 2
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# r: 0.15
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# zscore: True
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# preProcessHow:
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# hctsa_name: EN_mse
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# ordered_args: ['scaleRange', 'm', 'r', 'preProcessHow']
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MultiScaleEntropy:
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base_name: mse
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labels:
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- entropy
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- intensive
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dependencies:
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configs:
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- scaleRange: [!range [1, 10]]
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m: 2
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r: 0.15
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preProcessHow: ['diff1', 'rescale_tau']
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zscore: True
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- scaleRange: [!range [1, 10]]
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m: 2
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r: 0.15
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zscore: True
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preProcessHow:
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hctsa_name: EN_mse
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ordered_args: ['scaleRange', 'm', 'r', 'preProcessHow']
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ShannonEntropy:
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base_name: shannon

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