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Load recommended mpich-config modules and env-vars on Aurora #7399

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Merged
merged 6 commits into from
Jun 12, 2025
Merged

Load recommended mpich-config modules and env-vars on Aurora #7399

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1145d45
Cleanup tabs
amametjanov May 30, 2025
5b276d8
Set and export unlimited core file size in debug-mode runs
amametjanov May 30, 2025
e75d3fe
Load recommended mpich-config module
amametjanov May 30, 2025
b0a2a02
Set recommended env-vars for threaded runs
amametjanov May 30, 2025
429b10f
Refine jobid_pattern regex on Aurora
amametjanov Jun 5, 2025
e072fff
Load collectives module with `--mpilib mpich1024`
amametjanov Jun 11, 2025
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1 change: 1 addition & 0 deletions cime_config/machines/config_batch.xml
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Expand Up @@ -553,6 +553,7 @@

<batch_system MACH="aurora" type="pbspro">
<batch_submit>/lus/flare/projects/E3SM_Dec/tools/qsub/throttle</batch_submit>
<jobid_pattern>(\d+)\.aurora-pbs</jobid_pattern>
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@amametjanov amametjanov Jun 5, 2025

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Occasionally, job submissions' stdout returns more output beyond a job's id: e.g.

ERROR: Couldn't match jobid_pattern '^(\d+)' within submit output:
 'auth: error returned: 15007
auth: Failed to receive auth token
No Permission.
qstat: cannot connect to server aurora-pbs-0001.hostmgmt.cm.aurora.alcf.anl.gov (errno=15007)
5435693.aurora-pbs-0001.hostmgmt.cm.aurora.alcf.anl.gov'

This regex update is to extract job-id from such longer strings to let CIME continue with its job stages.

<directives>
<directive> -l filesystems=home:flare </directive>
</directives>
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