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Nov 19, 2024
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Add v2.1 data #50

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Add v2.1 data
forsyth2 Nov 13, 2024
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Updates on Perlmutter
forsyth2 Nov 13, 2024
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forsyth2 Nov 19, 2024
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2 changes: 2 additions & 0 deletions docs/source/index.rst
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Expand Up @@ -16,10 +16,12 @@ simulations.
:caption: Contents:

v2/index
v2.1/index
SCREAMv0/index
SCREAMv1/index



.. Indices and tables
.. ==================
..
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17 changes: 17 additions & 0 deletions docs/source/v2.1/WaterCycle/index.rst
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E3SMv2.1 (Water Cycle)
====================

The simulation campaign for E3SMv2.1 was performed with Low Resolution (LR) configuration

* **v2_1.LR** (lower resolution)

If you use data from this simulation campaign, please cite the following overview
manuscript:

* `Smith et al. 2024 (GMD) <https://gmd.copernicus.org/preprints/gmd-2024-149>`_

.. toctree::
:maxdepth: 2
:caption: Contents:

simulation_data/index
56 changes: 56 additions & 0 deletions docs/source/v2.1/WaterCycle/simulation_data/index.rst
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***************
Simulation Data
***************

The E3SMv2.1 simulation data is available on **ESGF** and **NERSC HPSS**.

The preferred retrieval method is **ESGF**. Native output is available at `ESGF <https://esgf-node.cels.anl.gov/search?project=CMIP6&activeFacets=%7B%22source_id%22%3A%22E3SM-2-1%22%7D>`_, and a subset of the data is reformatted to conform to CMIP conventions and submmited to the CMIP6 ESGF archive (ESGF links are provided in the table below for published data).
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@chengzhuzhang chengzhuzhang Nov 19, 2024

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@forsyth2
Sorry that I didn't catch this problem, but found it when reviewing the newsletter article. We did not publish v2.1 native data to ESGF. Could you update this to:
The data is reformatted to conform to CMIP conventions and submmited to the CMIP6 ESGF archive (ESGF links are provided in the table below for published data).


Additionally, all native model output data has also been archived on **NERSC HPSS** using `zstash <https://e3sm-project.github.io/zstash>`_.

**If you have an account on NERSC**, you can retrieve the data locally or remotely using Globus.

To download simulation data locally on a NERSC machine: ::

zstash extract --hpss=<HPSS path below>

To download simulation data remotely using the zstash Globus interface: ::

zstash extract --hpss=globus://nersc/<HPSS path below>

or ::

zstash extract --hpss=globus://9cd89cfd-6d04-11e5-ba46-22000b92c6ec/<HPSS path below>
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@chengzhuzhang chengzhuzhang Nov 18, 2024 •
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Same as above


Note that the data management tool `zstash <https://github.com/E3SM-Project/zstash>`_ is available from the `E3SM-Unified <https://github.com/E3SM-Project/e3sm-unified>`_ conda environment. An example of retrieving all **eam.h0** (monthly atmosphere output files) between **years 0030 and 0049** for the v2_1.LR.piControl simulation at NERSC locally is demonstrated as below in two steps:

1. To activate E3SM-Unified environment by:
::

source /global/common/software/e3sm/anaconda_envs/load_latest_e3sm_unified_pm-cpu.sh

2. To retrieve files with zstash command:
::

zstash extract --hpss=/home/projects/e3sm/www/WaterCycle/E3SMv2_1/v2_1.LR.piControl "*.eam.h0.00[3-4]?-??.nc"


For more information, refer to `zstash usage <https://e3sm-project.github.io/zstash/_build/html/master/usage.html#extract>`_.


**If you do not have access to NERSC**, you can download simulation data directly through the NERSC HPSS
`web interface <https://portal.nersc.gov/archive/home/projects/e3sm/www/WaterCycle/E3SMv2_1>`_.
Note that this will be slow and inefficient since you'll have to download the tar files.

**v2_1.LR** simulations data has been archived on NERSC HPSS under: ::

/home/projects/e3sm/www/WaterCycle/E3SMv2_1
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@forsyth2 forsyth2 Nov 18, 2024

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Checked HPSS path ✅



Original run scripts can be found `here <https://github.com/E3SM-Project/e3sm_data_docs/tree/main/run_scripts/v2.1/original>`_.
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@forsyth2 forsyth2 Nov 18, 2024

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This link will exist after this PR is merged.


.. toctree::
:maxdepth: 2
:caption: Contents:

simulation_table
29 changes: 29 additions & 0 deletions docs/source/v2.1/WaterCycle/simulation_data/simulation_table.rst
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**********************************
v2.1 WaterCycle simulation table
**********************************

+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| Simulation | Data Size (TB) | ESGF Links | HPSS Path |
+===================================================================+=================+==================================================================================================================================================================================================================================================================================================================================================================================================================+==================================================================================+
| **LR > DECK** | | | |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| v2_1.LR.piControl | 45 | `CMIP <https://esgf-node.cels.anl.gov/search/?project=CMIP6&activeFacets=%7B%22source_id%22%3A%22E3SM-2-1%22%2C%22experiment_id%22%3A%22piControl%22%2C%22variant_label%22%3A%22r1i1p1f1%22%7D>`_ | /home/projects/e3sm/www/WaterCycle/E3SMv2_1/v2_1.LR.piControl |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| v2_1.LR.1pctCO2_0101 | 14 | `CMIP <https://esgf-node.cels.anl.gov/search/?project=CMIP6&activeFacets=%7B%22source_id%22%3A%22E3SM-2-1%22%2C%22experiment_id%22%3A%221pctCO2%22%2C%22variant_label%22%3A%22r1i1p1f1%22%7D>`_ | /home/projects/e3sm/www/WaterCycle/E3SMv2_1/v2_1.LR.1pctCO2_0101 |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| v2_1.LR.abrupt-4xCO2_0101 | 14 | `CMIP <https://esgf-node.cels.anl.gov/search/?project=CMIP6&activeFacets=%7B%22source_id%22%3A%22E3SM-2-1%22%2C%22experiment_id%22%3A%22abrupt-4xCO2%22%2C%22variant_label%22%3A%22r1i1p1f1%22%7D>`_ | /home/projects/e3sm/www/WaterCycle/E3SMv2_1/v2_1.LR.abrupt-4xCO2_0101 |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| v2_1.LR.amip_0101 | 1 | `CMIP <https://esgf-node.cels.anl.gov/search/?project=CMIP6&activeFacets=%7B%22source_id%22%3A%22E3SM-2-1%22%2C%22experiment_id%22%3A%22amip%22%2C%22variant_label%22%3A%22r1i1p1f1%22%7D>`_ | /home/projects/e3sm/www/WaterCycle/E3SMv2_1/v2_1.LR.amip_0101 |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| **LR > Historical** | | | |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| v2_1.LR.historical_0101 | 14 | `CMIP <https://esgf-node.cels.anl.gov/search/?project=CMIP6&activeFacets=%7B%22source_id%22%3A%22E3SM-2-1%22%2C%22experiment_id%22%3A%22historical%22%2C%22variant_label%22%3A%22r1i1p1f1%22%7D>`_ | /home/projects/e3sm/www/WaterCycle/E3SMv2_1/v2_1.LR.historical_0101 |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| v2_1.LR.historical_0151 | 15 | `CMIP <https://esgf-node.cels.anl.gov/search/?project=CMIP6&activeFacets=%7B%22source_id%22%3A%22E3SM-2-1%22%2C%22experiment_id%22%3A%22historical%22%2C%22variant_label%22%3A%22r2i1p1f1%22%7D>`_ | /home/projects/e3sm/www/WaterCycle/E3SMv2_1/v2_1.LR.historical_0151 |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| v2_1.LR.historical_0201 | 15 | `CMIP <https://esgf-node.cels.anl.gov/search/?project=CMIP6&activeFacets=%7B%22source_id%22%3A%22E3SM-2-1%22%2C%22experiment_id%22%3A%22historical%22%2C%22variant_label%22%3A%22r3i1p1f1%22%7D>`_ | /home/projects/e3sm/www/WaterCycle/E3SMv2_1/v2_1.LR.historical_0201 |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| v2_1.LR.historical_0251 | 15 | `CMIP <https://esgf-node.cels.anl.gov/search/?project=CMIP6&activeFacets=%7B%22source_id%22%3A%22E3SM-2-1%22%2C%22experiment_id%22%3A%22historical%22%2C%22variant_label%22%3A%22r4i1p1f1%22%7D>`_ | /home/projects/e3sm/www/WaterCycle/E3SMv2_1/v2_1.LR.historical_0251 |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
| v2_1.LR.historical_0301 | 15 | `CMIP <https://esgf-node.cels.anl.gov/search/?project=CMIP6&activeFacets=%7B%22source_id%22%3A%22E3SM-2-1%22%2C%22experiment_id%22%3A%22historical%22%2C%22variant_label%22%3A%22r5i1p1f1%22%7D>`_ | /home/projects/e3sm/www/WaterCycle/E3SMv2_1/v2_1.LR.historical_0301 |
+-------------------------------------------------------------------+-----------------+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------------------------------------------------------------------------------+
8 changes: 8 additions & 0 deletions docs/source/v2.1/index.rst
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v2.1
==========================================

.. toctree::
:maxdepth: 2
:caption: Contents:

WaterCycle/index
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