Update aurora spack templates with latest modules
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There was a problem hiding this comment. @xylar to explain a little of what's going on. First, I loaded the (needed) modules from the source /usr/share/lmod/lmod/init/sh
module load cmake/3.31.8
module load oneapi/release/2025.2.0Then I ran: $ which cmake
/opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/cmake-3.31.8-mvhtj5u/bin/cmake
$ ls -d /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/libiconv*
ls: cannot access '/opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/libiconv*': No such file or directory
$ ls -d /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/libxml2*
/opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/libxml2-2.13.5-dhzcbk4
$ ls -d /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/gcc-runtime-*
/opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/gcc-runtime-13.3.0-ghotoln
$ which mpicc
/opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/oneapi-2025.2.0/mpich-develop-git.6037a7a-cym6jg6/bin/mpiccwhich is where I got the new paths from. Also that's what's lead to the decision to delete the |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| {%- set compiler = "oneapi@2025.2.0" %} | ||
| {%- set mpi = "[email protected]" %} | ||
|
|
||
| spack: | ||
|
|
@@ -17,7 +17,7 @@ spack: | |
| unify: true | ||
| packages: | ||
| all: | ||
| compiler: [{{ compiler }}, [email protected]] | ||
| providers: | ||
| mpi: [{{ mpi }}] | ||
| bison: | ||
|
|
@@ -32,8 +32,8 @@ spack: | |
| buildable: false | ||
| cmake: | ||
| externals: | ||
| - spec: cmake@3.31.8 | ||
| prefix: /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/cmake-3.31.8-mvhtj5u | ||
| buildable: false | ||
| curl: | ||
| externals: | ||
|
|
@@ -53,17 +53,12 @@ spack: | |
| gmake: | ||
| externals: | ||
| - spec: [email protected] | ||
| prefix: /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/gmake-4.4.1-wza7sk4 | ||
| buildable: false | ||
| libxml2: | ||
| externals: | ||
| - spec: [email protected] | ||
| prefix: /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/libxml2-2.13.5-dhzcbk4 | ||
| buildable: false | ||
| openssl: | ||
| externals: | ||
|
|
@@ -89,51 +84,75 @@ spack: | |
| externals: | ||
| - spec: {{ compiler }} | ||
| modules: | ||
| - oneapi/release/2025.2.0 | ||
| extra_attributes: | ||
| compilers: | ||
| c: /opt/aurora/25.190.0/oneapi/compiler/latest/bin/icx | ||
| cxx: /opt/aurora/25.190.0/oneapi/compiler/latest/bin/icpx | ||
| fortran: /opt/aurora/25.190.0/oneapi/compiler/latest/bin/ifx | ||
| buildable: false | ||
| gcc: | ||
| externals: | ||
| - spec: [email protected] | ||
| modules: | ||
| - gcc/13.3.0 | ||
| buildable: false | ||
| gcc-runtime: | ||
| externals: | ||
| - spec: [email protected]%[email protected] | ||
| prefix: /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/gcc-runtime-13.3.0-ghotoln | ||
| buildable: false | ||
| mpich: | ||
| externals: | ||
| - spec: {{ mpi }}%{{ compiler }} | ||
| prefix: /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/oneapi-2025.2.0/mpich-develop-git.6037a7a-cym6jg6 | ||
| buildable: false | ||
| {%- if e3sm_hdf5_netcdf %} | ||
| hdf5: | ||
| externals: | ||
| - spec: [email protected].6+cxx+fortran+hl+mpi | ||
| prefix: /lus/flare/projects/E3SMinput/soft/hdf5/1.14.6/oneapi.2025.2.0 | ||
| buildable: false | ||
| netcdf-c: | ||
| externals: | ||
| - spec: [email protected].3+mpi~parallel-netcdf | ||
| prefix: /lus/flare/projects/E3SMinput/soft/netcdf/4.9.3c-4.6.2f/oneapi.2025.2.0 | ||
| buildable: false | ||
| netcdf-fortran: | ||
| externals: | ||
| - spec: [email protected].2 | ||
| prefix: /lus/flare/projects/E3SMinput/soft/netcdf/4.9.3c-4.6.2f/oneapi.2025.2.0 | ||
| buildable: false | ||
| parallel-netcdf: | ||
| externals: | ||
| - spec: parallel-netcdf@1.14.0+cxx+fortran | ||
| prefix: /lus/flare/projects/E3SMinput/soft/pnetcdf/1.14.0/oneapi.2025.2.0 | ||
| buildable: false | ||
| {%- endif %} | ||
| compilers: | ||
| - compiler: | ||
| spec: {{ compiler }} | ||
| paths: | ||
| cc: /opt/aurora/25.190.0/oneapi/compiler/latest/bin/icx | ||
| cxx: /opt/aurora/25.190.0/oneapi/compiler/latest/bin/icpx | ||
| f77: /opt/aurora/25.190.0/oneapi/compiler/latest/bin/ifx | ||
| fc: /opt/aurora/25.190.0/oneapi/compiler/latest/bin/ifx | ||
| flags: {} | ||
| operating_system: sles15 | ||
| target: x86_64 | ||
| modules: [] | ||
| environment: {} | ||
| extra_rpaths: [] | ||
| - compiler: | ||
| spec: [email protected] | ||
| paths: | ||
| cc: /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/gcc-13.3.0-4enwbrb/bin/gcc | ||
| cxx: /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/gcc-13.3.0-4enwbrb/bin/g++ | ||
| f77: /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/gcc-13.3.0-4enwbrb/bin/gfortran | ||
| fc: /opt/aurora/25.190.0/spack/unified/0.10.1/install/linux-sles15-x86_64/gcc-13.3.0/gcc-13.3.0-4enwbrb/bin/gfortran | ||
| operating_system: sles15 | ||
| target: x86_64 | ||
| modules: [gcc/13.3.0] | ||
| flags: {} | ||
| environment: {} | ||
| extra_rpaths: [] | ||
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This was fairly clearly a mixup. Aurora must have been added about the same time Althea and I removed support of
use_system_hdf5_netcdfand it got left with that incorrect config option.