Add omega support and enhance barotropic_gyre #1370
Workflow file for this run
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| name: Build and Test Polaris | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| workflow_dispatch: | |
| env: | |
| CANCEL_OTHERS: false | |
| PATHS_IGNORE: '["**/README.md", "**/docs/**"]' | |
| jobs: | |
| pre-commit-hooks: | |
| name: lint with pre-commit | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 5 | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/skip-duplicate-actions@master | |
| with: | |
| cancel_others: ${{ env.CANCEL_OTHERS }} | |
| paths_ignore: ${{ env.PATHS_IGNORE }} | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Checkout Code Repository | |
| uses: actions/checkout@v5 | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Set up Python 3.13 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.13" | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| id: file_changes | |
| uses: trilom/[email protected] | |
| with: | |
| output: ' ' | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| # Run all pre-commit hooks on all the files. | |
| # Getting only staged files can be tricky in case a new PR is opened | |
| # since the action is run on a branch in detached head state | |
| name: Install and Run Pre-commit | |
| uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --files ${{ steps.file_changes.outputs.files}} | |
| build: | |
| name: test polaris - py ${{ matrix.python-version }}${{ matrix.env_only && ' (env_only)' || '' }} | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| env_only: [false] | |
| include: | |
| - python-version: "3.13" | |
| env_only: true | |
| fail-fast: false | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/skip-duplicate-actions@master | |
| with: | |
| cancel_others: ${{ env.CANCEL_OTHERS }} | |
| paths_ignore: ${{ env.PATHS_IGNORE }} | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| uses: actions/checkout@v5 | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Cache Conda | |
| uses: actions/cache@v4 | |
| env: | |
| # Increase this value to reset cache if conda-dev-spec.template has not changed in the workflow | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir_py${{ matrix.python-version }}${{ matrix.env_only && '_envonly' || '' }} | |
| key: ${{ runner.os }}-${{ matrix.python-version }}${{ matrix.env_only && '-envonly' || '' }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('configure_polaris_envs.py,deploy/*') }} | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Set up Conda Environment | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-name: polaris_test | |
| init-shell: bash | |
| condarc: | | |
| channel_priority: strict | |
| channels: | |
| - conda-forge | |
| - e3sm/label/polaris | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Install polaris | |
| run: | | |
| git config --global url."https://github.com/".insteadOf "[email protected]:" | |
| if [ "${{ matrix.env_only }}" = "true" ]; then | |
| ./configure_polaris_envs.py \ | |
| --conda_env_only \ | |
| --env_name polaris_test \ | |
| --verbose \ | |
| --python=${{ matrix.python-version }} | |
| source load_polaris_test.sh | |
| else | |
| ./configure_polaris_envs.py \ | |
| --env_name polaris_test \ | |
| --verbose \ | |
| --python=${{ matrix.python-version }} | |
| source load_polaris_test_mpich.sh | |
| fi | |
| python -c "import polaris; import polaris.version; print(polaris.version.__version__)" | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Build Sphinx Docs | |
| run: | | |
| if [ "${{ matrix.env_only }}" = "true" ]; then | |
| source load_polaris_test.sh | |
| else | |
| source load_polaris_test_mpich.sh | |
| fi | |
| DOCS_VERSION=test | |
| cd docs | |
| DOCS_VERSION=$DOCS_VERSION make versioned-html |