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Set default model for mpas_to_yaml to mpas-ocean #227
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TestingI was able to convert the following namelist file: mpas-ocean:
run_modes:
config_ocean_run_mode: forward
time_integration:
config_dt: 00:04:00
config_time_integrator: split_explicit_ab2
split_explicit_ts:
config_btr_dt: 00:00:10
time_management:
config_run_duration: 0000-01-00_00:00:00
io:
config_write_output_on_startup: false
decomposition:
config_block_decomp_file_prefix: graph.info.part.
hmix_del2:
config_use_mom_del2: true
config_use_tracer_del2: true
config_mom_del2: 6.0
config_tracer_del2: 1.0
cvmix:
config_cvmix_background_diffusion: 5e-05
config_cvmix_background_viscosity: 0.001
config_use_cvmix_convection: true
config_cvmix_convective_diffusion: 0.1
config_cvmix_convective_viscosity: 0.1
config_use_cvmix_shear: false
config_cvmix_use_BLD_smoothing: false
land_ice_fluxes:
config_land_ice_flux_attenuation_coefficient: 10.0
config_land_ice_flux_boundaryLayerThickness: 10.0
config_land_ice_flux_explicit_topDragCoeff: 0.0025
config_land_ice_flux_tidal_Jourdain_U0: 0.01
config_land_ice_flux_jenkins_heat_transfer_coefficient: 0.0194
config_land_ice_flux_jenkins_salt_transfer_coefficient: 0.00055428571
bottom_drag:
config_implicit_constant_bottom_drag_coeff: 0.0025
eos:
config_eos_type: linear
eos_linear:
config_eos_linear_alpha: 0.03836
config_eos_linear_beta: 0.8059
config_eos_linear_Tref: -1.0
config_eos_linear_Sref: 34.2
config_eos_linear_densityref: 1027.51
pressure_gradient:
config_pressure_gradient_type: pressure_and_zmid
debug:
config_check_ssh_consistency: false
AM_timeSeriesStatsMonthly:
config_AM_timeSeriesStatsMonthly_restart_stream: nonewith a version of MPAS-Ocean built with the latest E3SM |
|
@hyungyukang, do you have time to give this a quick look? The changes are small but I know you've used this tool relatively recently. |
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@xylar , Changes look good!
I'm approving this PR based on my visual inspection and test. And the changes in this PR will not affect the connection between Polaris and Omega-0.
I was also able to convert default_inputs/namelist.ocean.forward and default_inputs/streams.ocean.forward to out.yaml. Although it is very long, I copied all lines of out.yaml here for the record.
out.yaml
mpas-ocean:
run_modes:
config_ocean_run_mode: forward
time_management:
config_do_restart: false
config_restart_timestamp_name: Restart_timestamp
config_start_time: 0001-01-01_00:00:00
config_stop_time: none
config_run_duration: 0010_00:00:00
config_calendar_type: noleap
config_output_reference_time: 0001-01-01_00:00:00
io:
config_write_output_on_startup: true
config_pio_num_iotasks: 0
config_pio_stride: 1
decomposition:
config_num_halos: 3
config_block_decomp_file_prefix: graph.info.part.
config_number_of_blocks: 0
config_explicit_proc_decomp: false
config_proc_decomp_file_prefix: graph.info.part.
time_integration:
config_dt: 00:05:00
config_time_integrator: split_explicit_ab2
config_number_of_time_levels: 2
hmix:
config_hmix_scaleWithMesh: false
config_maxMeshDensity: -1.0
config_hmix_use_ref_cell_width: false
config_hmix_ref_cell_width: 30000.0
config_apvm_scale_factor: 0.0
hmix_del2:
config_use_mom_del2: false
config_mom_del2: 1000.0
config_use_tracer_del2: false
config_tracer_del2: 10.0
hmix_del4:
config_use_mom_del4: false
config_mom_del4: 120000000000.0
config_mom_del4_div_factor: 1.0
config_use_tracer_del4: false
config_tracer_del4: 0.0
hmix_Leith:
config_use_Leith_del2: false
config_Leith_parameter: 1.0
config_Leith_dx: 15000.0
config_Leith_visc2_max: 2500.0
Redi_isopycnal_mixing:
config_use_Redi: false
config_Redi_closure: constant
config_Redi_constant_kappa: 600.0
config_Redi_maximum_slope: 0.3
config_Redi_use_slope_taper: true
config_Redi_use_surface_taper: true
config_Redi_limit_term1: true
config_Redi_use_quasi_monotone_limiter: true
config_Redi_quasi_monotone_safety_factor: 0.9
config_Redi_min_layers_diag_terms: 6
config_Redi_horizontal_taper: ramp
config_Redi_horizontal_ramp_min: 20000.0
config_Redi_horizontal_ramp_max: 30000.0
submesoscale_eddy_parameterization:
config_submesoscale_enable: false
config_submesoscale_tau: 172800
config_submesoscale_Ce: 0.06
config_submesoscale_Lfmin: 1000.0
config_submesoscale_ds_max: 100000.0
GM_eddy_parameterization:
config_use_GM: false
config_GM_closure: EdenGreatbatch
config_GM_constant_kappa: 600.0
config_GM_constant_bclModeSpeed: 0.3
config_GM_minBclModeSpeed_method: constant
config_GM_spatially_variable_min_kappa: 300.0
config_GM_spatially_variable_max_kappa: 1800.0
config_GM_spatially_variable_baroclinic_mode: 1.0
config_GM_Visbeck_alpha: 0.005
config_GM_Visbeck_max_depth: 1000.0
config_GM_EG_riMin: 200.0
config_GM_EG_kappa_factor: 3.0
config_GM_EG_Rossby_factor: 2.0
config_GM_EG_Rhines_factor: 0.3
config_GM_horizontal_taper: ramp
config_GM_horizontal_ramp_min: 20000.0
config_GM_horizontal_ramp_max: 30000.0
config_GMRedi_Rossby_ramp_min: 0.5
config_GMRedi_Rossby_ramp_max: 3.0
eddy_parameterization:
config_eddyMLD_dens_threshold: 0.03
config_eddyMLD_reference_depth: 10
config_eddyMLD_reference_pressure: 100000.0
config_eddyMLD_use_old: true
cvmix:
config_use_cvmix: true
config_cvmix_prandtl_number: 1.0
config_cvmix_background_scheme: constant
config_cvmix_background_diffusion: 1e-05
config_cvmix_background_diffusion_passive: 1e-05
config_cvmix_background_diffusion_passive_enable: false
config_cvmix_background_viscosity: 0.0001
config_cvmix_BryanLewis_bl1: 8e-05
config_cvmix_BryanLewis_bl2: 0.000105
config_cvmix_BryanLewis_transitionDepth: 2500
config_cvmix_BryanLewis_transitionWidth: 222.0
config_use_cvmix_convection: false
config_cvmix_convective_diffusion: 1.0
config_cvmix_convective_viscosity: 1.0
config_cvmix_convective_basedOnBVF: true
config_cvmix_convective_triggerBVF: 0.0
config_use_cvmix_shear: false
config_cvmix_num_ri_smooth_loops: 2
config_cvmix_use_BLD_smoothing: true
config_cvmix_shear_mixing_scheme: PP
config_cvmix_shear_PP_nu_zero: 0.005
config_cvmix_shear_PP_alpha: 5.0
config_cvmix_shear_PP_exp: 2.0
config_cvmix_shear_KPP_nu_zero: 0.005
config_cvmix_shear_KPP_Ri_zero: 0.7
config_cvmix_shear_KPP_exp: 3
config_use_cvmix_tidal_mixing: false
config_use_cvmix_double_diffusion: false
config_use_cvmix_kpp: false
config_use_cvmix_fixed_boundary_layer: false
config_cvmix_kpp_boundary_layer_depth: 30.0
config_cvmix_kpp_criticalBulkRichardsonNumber: 0.25
config_cvmix_kpp_matching: SimpleShapes
config_cvmix_kpp_EkmanOBL: false
config_cvmix_kpp_MonObOBL: false
config_cvmix_kpp_interpolationOMLType: quadratic
config_cvmix_kpp_surface_layer_extent: 0.1
config_cvmix_kpp_surface_layer_averaging: 5.0
configure_cvmix_kpp_minimum_OBL_under_sea_ice: 10.0
config_cvmix_kpp_stop_OBL_search: 100.0
config_cvmix_kpp_use_enhanced_diff: true
config_cvmix_kpp_nonlocal_with_implicit_mix: false
config_cvmix_kpp_use_theory_wave: false
config_cvmix_kpp_langmuir_mixing_opt: NONE
config_cvmix_kpp_langmuir_entrainment_opt: NONE
config_cvmix_kpp_use_active_wave: false
wave_coupling:
config_use_active_wave: false
config_n_stokes_drift_wavenumber_partitions: 6
gotm:
config_use_gotm: false
config_gotm_namelist_file: gotmturb.nml
config_gotm_constant_surface_roughness_length: 0.02
config_gotm_constant_bottom_roughness_length: 0.0015
config_gotm_constant_bottom_drag_coeff: 0.001
forcing:
config_use_variable_drag: false
config_use_bulk_wind_stress: false
config_use_bulk_thickness_flux: false
config_flux_attenuation_coefficient: 0.001
config_flux_attenuation_coefficient_runoff: 0.001
time_varying_forcing:
config_use_time_varying_atmospheric_forcing: false
config_time_varying_atmospheric_forcing_type: WINDPRES
config_time_varying_atmospheric_forcing_start_time: 0001-01-01_00:00:00
config_time_varying_atmospheric_forcing_reference_time: 0001-01-01_00:00:00
config_time_varying_atmospheric_forcing_cycle_start: 0001-01-01_00:00:00
config_time_varying_atmospheric_forcing_cycle_duration: 2-00-00_00:00:00
config_time_varying_atmospheric_forcing_interval: 01:00:00
config_time_varying_atmospheric_forcing_ramp: 10.0
config_time_varying_atmospheric_forcing_ramp_delay: 0.0
config_use_time_varying_land_ice_forcing: false
config_time_varying_land_ice_forcing_start_time: 0001-01-01_00:00:00
config_time_varying_land_ice_forcing_reference_time: 0001-01-01_00:00:00
config_time_varying_land_ice_forcing_cycle_start: 0001-01-01_00:00:00
config_time_varying_land_ice_forcing_cycle_duration: 2-00-00_00:00:00
config_time_varying_land_ice_forcing_interval: 01:00:00
coupling:
config_remove_AIS_coupler_runoff: false
shortwaveRadiation:
config_sw_absorption_type: none
config_jerlov_water_type: 3
config_surface_buoyancy_depth: 1
config_enable_shortwave_energy_fixer: false
tidal_forcing:
config_use_tidal_forcing: false
config_use_tidal_forcing_tau: 10000
config_tidal_forcing_type: off
config_tidal_forcing_model: off
config_tidal_forcing_monochromatic_amp: 2.0
config_tidal_forcing_monochromatic_period: 0.5
config_tidal_forcing_monochromatic_phaseLag: 0.0
config_tidal_forcing_monochromatic_baseline: 0.0
config_tidal_forcing_linear_baseline: 0.0
config_tidal_forcing_linear_min: -1.0
config_tidal_forcing_linear_rate: -8.0
self_attraction_loading:
config_use_self_attraction_loading: false
config_self_attraction_loading_smoothing_width: 1.0
config_mpas_to_grid_weights_file: mpas_to_grid.nc
config_grid_to_mpas_weights_file: grid_to_mpas.nc
config_self_attraction_loading_compute_interval: 0000-00-00_00:30:00
config_nLatitude: 128
config_nLongitude: 256
config_use_parallel_self_attraction_loading: false
config_parallel_self_attraction_loading_order: 10
config_parallel_self_attraction_loading_n_cells_per_block: 600
config_parallel_self_attraction_loading_bfb: false
tidal_potential_forcing:
config_use_tidal_potential_forcing: false
config_tidal_potential_reference_time: 0001-01-01_00:00:00
config_use_tidal_potential_forcing_M2: true
config_use_tidal_potential_forcing_S2: true
config_use_tidal_potential_forcing_N2: true
config_use_tidal_potential_forcing_K2: true
config_use_tidal_potential_forcing_K1: true
config_use_tidal_potential_forcing_O1: true
config_use_tidal_potential_forcing_Q1: true
config_use_tidal_potential_forcing_P1: true
config_tidal_potential_ramp: 10.0
config_self_attraction_and_loading_beta: 0.09
frazil_ice:
config_use_frazil_ice_formation: false
config_frazil_in_open_ocean: true
config_frazil_under_land_ice: true
config_frazil_heat_of_fusion: 334000.0
config_frazil_ice_density: 1000.0
config_frazil_fractional_thickness_limit: 0.1
config_specific_heat_sea_water: 3985.0
config_frazil_maximum_depth: 100.0
config_frazil_sea_ice_reference_salinity: 4.0
config_frazil_land_ice_reference_salinity: 0.0
config_frazil_maximum_freezing_temperature: 0.0
config_frazil_use_surface_pressure: true
land_ice_fluxes:
config_land_ice_flux_mode: off
config_land_ice_flux_formulation: Jenkins
config_land_ice_flux_useHollandJenkinsAdvDiff: false
config_land_ice_flux_attenuation_coefficient: 10.0
config_land_ice_flux_boundaryLayerThickness: 10.0
config_land_ice_flux_boundaryLayerNeighborWeight: 0.0
config_land_ice_flux_cp_ice: 2009.0
config_land_ice_flux_rho_ice: 918
config_land_ice_flux_explicit_topDragCoeff: 0.0025
config_land_ice_flux_ISOMIP_gammaT: 0.0001
config_land_ice_flux_rms_tidal_velocity: 0.05
config_land_ice_flux_jenkins_heat_transfer_coefficient: 0.011
config_land_ice_flux_jenkins_salt_transfer_coefficient: 0.00031
advection:
config_vert_advection_method: flux-form
config_vert_remap_order: 3
config_vert_remap_interval: 0
config_vert_tracer_adv_flux_order: 3
config_horiz_tracer_adv_order: 3
config_coef_3rd_order: 0.25
config_flux_limiter: monotonic
config_remap_limiter: monotonic
config_thickness_flux_type: centered
bottom_drag:
config_bottom_drag_mode: implicit
config_implicit_bottom_drag_type: constant
config_implicit_constant_bottom_drag_coeff: 0.001
config_use_implicit_top_drag: false
config_implicit_top_drag_coeff: 0.001
config_loglaw_bottom_roughness: 0.001
config_loglaw_layer_depth_max: 10.0
config_loglaw_bottom_drag_min: 0.0025
config_loglaw_bottom_drag_max: 0.1
config_explicit_bottom_drag_coeff: 0.001
config_use_topographic_wave_drag: false
config_topographic_wave_drag_coeff: 0.0005
config_thickness_drag_type: centered
Rayleigh_damping:
config_Rayleigh_damping_coeff: 0.0001
config_Rayleigh_damping_depth_variable: false
config_Rayleigh_bottom_friction: false
config_Rayleigh_bottom_damping_coeff: 0.0001
vegetation_drag:
config_use_vegetation_drag: false
config_vegetation_drag_coefficient: 1.09
wetting_drying:
config_use_wetting_drying: false
config_prevent_drying: false
config_drying_min_cell_height: 0.001
config_zero_drying_velocity: false
config_zero_drying_velocity_ramp: false
config_zero_drying_velocity_ramp_hmin: 0.001
config_zero_drying_velocity_ramp_hmax: 0.002
config_verify_not_dry: false
config_drying_safety_height: 1e-10
config_use_subgrid_wetting_drying: false
config_use_ssh_gradient_wetting_drying: false
ocean_constants:
config_density0: 1026.0
lts:
config_dt_scaling_LTS: 1
forward_backward:
config_fb_weight_1: 0.531
config_fb_weight_2: 0.531
config_fb_weight_3: 0.313
pressure_gradient:
config_pressure_gradient_type: pressure_and_zmid
config_common_level_weight: 0.5
config_zonal_ssh_grad: 0.0
config_meridional_ssh_grad: 0.0
eos:
config_eos_type: linear
config_open_ocean_freezing_temperature_coeff_0: 0.0
config_open_ocean_freezing_temperature_coeff_S: 0.0
config_open_ocean_freezing_temperature_coeff_p: 0.0
config_open_ocean_freezing_temperature_coeff_pS: 0.0
config_open_ocean_freezing_temperature_coeff_mushy_az1_liq: -18.48
config_land_ice_cavity_freezing_temperature_coeff_0: 0.0622
config_land_ice_cavity_freezing_temperature_coeff_S: -0.0563
config_land_ice_cavity_freezing_temperature_coeff_p: -7.43e-08
config_land_ice_cavity_freezing_temperature_coeff_pS: -1.74e-10
eos_linear:
config_eos_linear_alpha: 0.2
config_eos_linear_beta: 0.8
config_eos_linear_Tref: 5.0
config_eos_linear_Sref: 35.0
config_eos_linear_densityref: 1000.0
eos_wright:
config_eos_wright_ref_pressure: 0.0
split_timestep_share:
config_n_ts_iter: 2
config_n_bcl_iter_beg: 1
config_n_bcl_iter_mid: 2
config_n_bcl_iter_end: 2
split_explicit_ts:
config_btr_dt: 0000_00:00:15
config_n_btr_cor_iter: 2
config_vel_correction: true
config_btr_subcycle_loop_factor: 2
config_btr_gam1_velWt1: 0.5333
config_btr_gam2_SSHWt1: 0.5333
config_btr_gam3_velWt2: 1.0
config_btr_solve_SSH2: false
split_implicit_ts:
config_btr_si_preconditioner: ras
config_btr_si_tolerance: 1e-09
config_n_btr_si_large_iter: 1
config_btr_si_partition_match_mode: false
ALE_vertical_grid:
config_vert_coord_movement: uniform_stretching
config_ALE_thickness_proportionality: restingThickness_times_weights
config_vert_taper_weight_depth_1: 250.0
config_vert_taper_weight_depth_2: 500.0
config_use_min_max_thickness: false
config_min_thickness: 1.0
config_max_thickness_factor: 6.0
config_dzdk_positive: false
ALE_frequency_filtered_thickness:
config_use_freq_filtered_thickness: false
config_thickness_filter_timescale: 5.0
config_use_highFreqThick_restore: false
config_highFreqThick_restore_time: 30.0
config_use_highFreqThick_del2: false
config_highFreqThick_del2: 100.0
debug:
config_check_zlevel_consistency: false
config_check_ssh_consistency: true
config_filter_btr_mode: false
config_prescribe_velocity: false
config_prescribe_thickness: false
config_include_KE_vertex: false
config_check_tracer_monotonicity: false
config_compute_active_tracer_budgets: true
config_disable_thick_all_tend: false
config_disable_thick_hadv: false
config_disable_thick_vadv: false
config_disable_thick_sflux: false
config_disable_vel_all_tend: false
config_disable_vel_hadv: false
config_disable_vel_coriolis: false
config_disable_vel_pgrad: false
config_disable_vel_hmix: false
config_disable_vel_surface_stress: false
config_disable_vel_topographic_wave_drag: false
config_disable_vel_explicit_bottom_drag: false
config_disable_vel_vmix: false
config_disable_vel_vadv: false
config_disable_tr_all_tend: false
config_disable_tr_adv: false
config_disable_tr_hmix: false
config_disable_tr_vmix: false
config_disable_tr_sflux: false
config_disable_tr_nonlocalflux: false
config_disable_redi_k33: false
config_read_nearest_restart: false
testing:
config_conduct_tests: false
config_test_tensors: false
config_tensor_test_function: sph_uCosCos
transport_tests:
config_transport_tests_vert_levels: 3
config_transport_tests_temperature: 15.0
config_transport_tests_salinity: 35.0
config_transport_tests_flow_id: 0
init_mode_vert_levels:
config_vert_levels: -1
manufactured_solution:
config_use_manufactured_solution: false
config_manufactured_solution_wavelength_x: 2000000.0
config_manufactured_solution_wavelength_y: 2000000.0
config_manufactured_solution_amplitude: 1
init_mode_subgrid:
config_subgrid_table_levels: -1
tracer_forcing_activeTracers:
config_use_activeTracers: true
config_use_activeTracers_surface_bulk_forcing: false
config_use_activeTracers_surface_restoring: false
config_use_activeTracers_interior_restoring: false
config_use_activeTracers_exponential_decay: false
config_use_activeTracers_idealAge_forcing: false
config_use_activeTracers_ttd_forcing: false
config_use_surface_salinity_monthly_restoring: false
config_surface_salinity_monthly_restoring_compute_interval: 0000-00-01_00:00:00
config_salinity_restoring_constant_piston_velocity: 1.585e-05
config_salinity_restoring_max_difference: 100.0
config_salinity_restoring_under_sea_ice: false
tracer_forcing_debugTracers:
config_use_debugTracers: false
config_reset_debugTracers_near_surface: false
config_reset_debugTracers_top_nLayers: 20
config_use_debugTracers_surface_bulk_forcing: false
config_use_debugTracers_surface_restoring: false
config_use_debugTracers_interior_restoring: false
config_use_debugTracers_exponential_decay: false
config_use_debugTracers_idealAge_forcing: false
config_use_debugTracers_ttd_forcing: false
tracer_forcing_ecosysTracers:
config_use_ecosysTracers: false
config_ecosys_atm_co2_option: none
config_ecosys_atm_alt_co2_option: none
config_ecosys_atm_alt_co2_use_eco: true
config_ecosys_atm_co2_constant_value: 379.0
config_use_ecosysTracers_surface_bulk_forcing: false
config_use_ecosysTracers_surface_restoring: false
config_use_ecosysTracers_interior_restoring: false
config_use_ecosysTracers_exponential_decay: false
config_use_ecosysTracers_idealAge_forcing: false
config_use_ecosysTracers_ttd_forcing: false
config_use_ecosysTracers_surface_value: false
config_use_ecosysTracers_river_inputs_from_coupler: false
config_use_ecosysTracers_sea_ice_coupling: false
config_ecosysTracers_diagnostic_fields_level1: false
config_ecosysTracers_diagnostic_fields_level2: false
config_ecosysTracers_diagnostic_fields_level3: false
config_ecosysTracers_diagnostic_fields_level4: false
config_ecosysTracers_diagnostic_fields_level5: false
tracer_forcing_DMSTracers:
config_use_DMSTracers: false
config_use_DMSTracers_surface_bulk_forcing: false
config_use_DMSTracers_surface_restoring: false
config_use_DMSTracers_interior_restoring: false
config_use_DMSTracers_exponential_decay: false
config_use_DMSTracers_idealAge_forcing: false
config_use_DMSTracers_ttd_forcing: false
config_use_DMSTracers_surface_value: false
config_use_DMSTracers_sea_ice_coupling: false
tracer_forcing_MacroMoleculesTracers:
config_use_MacroMoleculesTracers: false
config_use_MacroMoleculesTracers_surface_bulk_forcing: false
config_use_MacroMoleculesTracers_surface_restoring: false
config_use_MacroMoleculesTracers_interior_restoring: false
config_use_MacroMoleculesTracers_exponential_decay: false
config_use_MacroMoleculesTracers_idealAge_forcing: false
config_use_MacroMoleculesTracers_ttd_forcing: false
config_use_MacroMoleculesTracers_surface_value: false
config_use_MacroMoleculesTracers_sea_ice_coupling: false
tracer_forcing_idealAgeTracers:
config_use_idealAgeTracers: false
config_use_idealAgeTracers_surface_bulk_forcing: false
config_use_idealAgeTracers_surface_restoring: false
config_use_idealAgeTracers_interior_restoring: false
config_use_idealAgeTracers_exponential_decay: false
config_use_idealAgeTracers_idealAge_forcing: true
config_use_idealAgeTracers_ttd_forcing: false
tracer_forcing_CFCTracers:
config_use_CFCTracers: false
config_use_CFCTracers_surface_bulk_forcing: false
config_use_CFCTracers_surface_restoring: false
config_use_CFCTracers_interior_restoring: false
config_use_CFCTracers_exponential_decay: false
config_use_CFCTracers_idealAge_forcing: false
config_use_CFCTracers_ttd_forcing: false
config_use_CFC11: true
config_use_CFC12: true
AM_globalStats:
config_AM_globalStats_enable: false
config_AM_globalStats_compute_interval: output_interval
config_AM_globalStats_compute_on_startup: false
config_AM_globalStats_write_on_startup: false
config_AM_globalStats_text_file: false
config_AM_globalStats_directory: analysis_members
config_AM_globalStats_output_stream: globalStatsOutput
AM_surfaceAreaWeightedAverages:
config_AM_surfaceAreaWeightedAverages_enable: false
config_AM_surfaceAreaWeightedAverages_compute_on_startup: true
config_AM_surfaceAreaWeightedAverages_write_on_startup: true
config_AM_surfaceAreaWeightedAverages_compute_interval: output_interval
config_AM_surfaceAreaWeightedAverages_output_stream: surfaceAreaWeightedAveragesOutput
AM_waterMassCensus:
config_AM_waterMassCensus_enable: false
config_AM_waterMassCensus_compute_interval: output_interval
config_AM_waterMassCensus_output_stream: waterMassCensusOutput
config_AM_waterMassCensus_compute_on_startup: false
config_AM_waterMassCensus_write_on_startup: false
config_AM_waterMassCensus_minTemperature: -2.0
config_AM_waterMassCensus_maxTemperature: 30.0
config_AM_waterMassCensus_minSalinity: 32.0
config_AM_waterMassCensus_maxSalinity: 37.0
config_AM_waterMassCensus_compute_predefined_regions: true
config_AM_waterMassCensus_region_group: ''
AM_layerVolumeWeightedAverage:
config_AM_layerVolumeWeightedAverage_enable: false
config_AM_layerVolumeWeightedAverage_compute_interval: output_interval
config_AM_layerVolumeWeightedAverage_compute_on_startup: false
config_AM_layerVolumeWeightedAverage_write_on_startup: false
config_AM_layerVolumeWeightedAverage_output_stream: layerVolumeWeightedAverageOutput
AM_zonalMean:
config_AM_zonalMean_enable: false
config_AM_zonalMean_compute_on_startup: true
config_AM_zonalMean_write_on_startup: true
config_AM_zonalMean_compute_interval: output_interval
config_AM_zonalMean_output_stream: zonalMeanOutput
config_AM_zonalMean_num_bins: 180
config_AM_zonalMean_min_bin: -1e+34
config_AM_zonalMean_max_bin: -1e+34
AM_okuboWeiss:
config_AM_okuboWeiss_enable: false
config_AM_okuboWeiss_compute_on_startup: true
config_AM_okuboWeiss_write_on_startup: true
config_AM_okuboWeiss_compute_interval: output_interval
config_AM_okuboWeiss_output_stream: okuboWeissOutput
config_AM_okuboWeiss_directory: analysis_members
config_AM_okuboWeiss_threshold_value: -0.2
config_AM_okuboWeiss_normalization: 1e-10
config_AM_okuboWeiss_lambda2_normalization: 1e-10
config_AM_okuboWeiss_use_lat_lon_coords: true
config_AM_okuboWeiss_compute_eddy_census: true
config_AM_okuboWeiss_eddy_min_cells: 20
AM_meridionalHeatTransport:
config_AM_meridionalHeatTransport_enable: false
config_AM_meridionalHeatTransport_compute_interval: output_interval
config_AM_meridionalHeatTransport_compute_on_startup: true
config_AM_meridionalHeatTransport_write_on_startup: true
config_AM_meridionalHeatTransport_output_stream: meridionalHeatTransportOutput
config_AM_meridionalHeatTransport_num_bins: 180
config_AM_meridionalHeatTransport_min_bin: -1e+34
config_AM_meridionalHeatTransport_max_bin: -1e+34
config_AM_meridionalHeatTransport_region_group: ''
AM_testComputeInterval:
config_AM_testComputeInterval_enable: false
config_AM_testComputeInterval_compute_interval: 00-00-01_00:00:00
config_AM_testComputeInterval_compute_on_startup: true
config_AM_testComputeInterval_write_on_startup: true
config_AM_testComputeInterval_output_stream: testComputeIntervalOutput
AM_highFrequencyOutput:
config_AM_highFrequencyOutput_enable: false
config_AM_highFrequencyOutput_compute_interval: output_interval
config_AM_highFrequencyOutput_output_stream: highFrequencyOutput
config_AM_highFrequencyOutput_compute_on_startup: true
config_AM_highFrequencyOutput_write_on_startup: true
AM_timeFilters:
config_AM_timeFilters_enable: false
config_AM_timeFilters_compute_interval: dt
config_AM_timeFilters_output_stream: timeFiltersOutput
config_AM_timeFilters_restart_stream: timeFiltersRestart
config_AM_timeFilters_compute_on_startup: true
config_AM_timeFilters_write_on_startup: true
config_AM_timeFilters_initialize_filters: true
config_AM_timeFilters_tau: 90_00:00:00
config_AM_timeFilters_compute_cell_centered_values: true
AM_lagrPartTrack:
config_AM_lagrPartTrack_enable: false
config_AM_lagrPartTrack_compute_interval: dt
config_AM_lagrPartTrack_compute_on_startup: false
config_AM_lagrPartTrack_output_stream: lagrPartTrackOutput
config_AM_lagrPartTrack_restart_stream: lagrPartTrackRestart
config_AM_lagrPartTrack_input_stream: lagrPartTrackInput
config_AM_lagrPartTrack_write_on_startup: true
config_AM_lagrPartTrack_filter_number: 0
config_AM_lagrPartTrack_timeIntegration: 2
config_AM_lagrPartTrack_reset_criteria: none
config_AM_lagrPartTrack_reset_global_timestamp: 0000_00:00:00
config_AM_lagrPartTrack_region_stream: lagrPartTrackRegions
config_AM_lagrPartTrack_reset_if_outside_region: false
config_AM_lagrPartTrack_reset_if_inside_region: false
config_AM_lagrPartTrack_sample_horizontal_interp: true
config_AM_lagrPartTrack_sample_temperature: true
config_AM_lagrPartTrack_sample_salinity: true
config_AM_lagrPartTrack_sample_DIC: false
config_AM_lagrPartTrack_sample_ALK: false
config_AM_lagrPartTrack_sample_PO4: false
config_AM_lagrPartTrack_sample_NO3: false
config_AM_lagrPartTrack_sample_SiO3: false
config_AM_lagrPartTrack_sample_NH4: false
config_AM_lagrPartTrack_sample_Fe: false
config_AM_lagrPartTrack_sample_O2: false
AM_eliassenPalm:
config_AM_eliassenPalm_enable: false
config_AM_eliassenPalm_compute_interval: output_interval
config_AM_eliassenPalm_output_stream: eliassenPalmOutput
config_AM_eliassenPalm_restart_stream: eliassenPalmRestart
config_AM_eliassenPalm_compute_on_startup: true
config_AM_eliassenPalm_write_on_startup: true
config_AM_eliassenPalm_debug: false
config_AM_eliassenPalm_nBuoyancyLayers: 45
config_AM_eliassenPalm_rhomin_buoycoor: 900
config_AM_eliassenPalm_rhomax_buoycoor: 1080
AM_mixedLayerDepths:
config_AM_mixedLayerDepths_enable: false
config_AM_mixedLayerDepths_compute_interval: output_interval
config_AM_mixedLayerDepths_output_stream: mixedLayerDepthsOutput
config_AM_mixedLayerDepths_write_on_startup: true
config_AM_mixedLayerDepths_compute_on_startup: true
config_AM_mixedLayerDepths_Tthreshold: true
config_AM_mixedLayerDepths_crit_temp_threshold: 0.2
config_AM_mixedLayerDepths_reference_pressure: 100000.0
config_AM_mixedLayerDepths_Tgradient: false
config_AM_mixedLayerDepths_Dgradient: false
config_AM_mixedLayerDepths_temp_gradient_threshold: 5e-07
config_AM_mixedLayerDepths_den_gradient_threshold: 5e-08
config_AM_mixedLayerDepths_interp_method: 1
AM_regionalStatsDaily:
config_AM_regionalStatsDaily_enable: false
config_AM_regionalStatsDaily_compute_on_startup: false
config_AM_regionalStatsDaily_write_on_startup: false
config_AM_regionalStatsDaily_compute_interval: output_interval
config_AM_regionalStatsDaily_output_stream: regionalStatsDailyOutput
config_AM_regionalStatsDaily_restart_stream: regionalMasksInput
config_AM_regionalStatsDaily_input_stream: regionalMasksInput
config_AM_regionalStatsDaily_operation: avg
config_AM_regionalStatsDaily_region_type: cell
config_AM_regionalStatsDaily_region_group: all
config_AM_regionalStatsDaily_1d_weighting_function: mul
config_AM_regionalStatsDaily_2d_weighting_function: mul
config_AM_regionalStatsDaily_1d_weighting_field: areaCell
config_AM_regionalStatsDaily_2d_weighting_field: volumeCell
config_AM_regionalStatsDaily_vertical_mask: cellMask
config_AM_regionalStatsDaily_vertical_dimension: nVertLevels
AM_regionalStatsWeekly:
config_AM_regionalStatsWeekly_enable: false
config_AM_regionalStatsWeekly_compute_on_startup: false
config_AM_regionalStatsWeekly_write_on_startup: false
config_AM_regionalStatsWeekly_compute_interval: output_interval
config_AM_regionalStatsWeekly_output_stream: regionalStatsWeeklyOutput
config_AM_regionalStatsWeekly_restart_stream: regionalMasksInput
config_AM_regionalStatsWeekly_input_stream: regionalMasksInput
config_AM_regionalStatsWeekly_operation: avg
config_AM_regionalStatsWeekly_region_type: cell
config_AM_regionalStatsWeekly_region_group: all
config_AM_regionalStatsWeekly_1d_weighting_function: mul
config_AM_regionalStatsWeekly_2d_weighting_function: mul
config_AM_regionalStatsWeekly_1d_weighting_field: areaCell
config_AM_regionalStatsWeekly_2d_weighting_field: volumeCell
config_AM_regionalStatsWeekly_vertical_mask: cellMask
config_AM_regionalStatsWeekly_vertical_dimension: nVertLevels
AM_regionalStatsMonthly:
config_AM_regionalStatsMonthly_enable: false
config_AM_regionalStatsMonthly_compute_on_startup: false
config_AM_regionalStatsMonthly_write_on_startup: false
config_AM_regionalStatsMonthly_compute_interval: output_interval
config_AM_regionalStatsMonthly_output_stream: regionalStatsMonthlyOutput
config_AM_regionalStatsMonthly_restart_stream: regionalMasksInput
config_AM_regionalStatsMonthly_input_stream: regionalMasksInput
config_AM_regionalStatsMonthly_operation: avg
config_AM_regionalStatsMonthly_region_type: cell
config_AM_regionalStatsMonthly_region_group: all
config_AM_regionalStatsMonthly_1d_weighting_function: mul
config_AM_regionalStatsMonthly_2d_weighting_function: mul
config_AM_regionalStatsMonthly_1d_weighting_field: areaCell
config_AM_regionalStatsMonthly_2d_weighting_field: volumeCell
config_AM_regionalStatsMonthly_vertical_mask: cellMask
config_AM_regionalStatsMonthly_vertical_dimension: nVertLevels
AM_regionalStatsCustom:
config_AM_regionalStatsCustom_enable: false
config_AM_regionalStatsCustom_compute_on_startup: false
config_AM_regionalStatsCustom_write_on_startup: false
config_AM_regionalStatsCustom_compute_interval: output_interval
config_AM_regionalStatsCustom_output_stream: regionalStatsCustomOutput
config_AM_regionalStatsCustom_restart_stream: regionalMasksInput
config_AM_regionalStatsCustom_input_stream: regionalMasksInput
config_AM_regionalStatsCustom_operation: avg
config_AM_regionalStatsCustom_region_type: cell
config_AM_regionalStatsCustom_region_group: all
config_AM_regionalStatsCustom_1d_weighting_function: mul
config_AM_regionalStatsCustom_2d_weighting_function: mul
config_AM_regionalStatsCustom_1d_weighting_field: areaCell
config_AM_regionalStatsCustom_2d_weighting_field: volumeCell
config_AM_regionalStatsCustom_vertical_mask: cellMask
config_AM_regionalStatsCustom_vertical_dimension: nVertLevels
AM_timeSeriesStatsDaily:
config_AM_timeSeriesStatsDaily_enable: false
config_AM_timeSeriesStatsDaily_compute_on_startup: false
config_AM_timeSeriesStatsDaily_write_on_startup: false
config_AM_timeSeriesStatsDaily_compute_interval: 00-00-00_01:00:00
config_AM_timeSeriesStatsDaily_output_stream: timeSeriesStatsDailyOutput
config_AM_timeSeriesStatsDaily_restart_stream: timeSeriesStatsDailyRestart
config_AM_timeSeriesStatsDaily_operation: avg
config_AM_timeSeriesStatsDaily_reference_times: initial_time
config_AM_timeSeriesStatsDaily_duration_intervals: repeat_interval
config_AM_timeSeriesStatsDaily_repeat_intervals: reset_interval
config_AM_timeSeriesStatsDaily_reset_intervals: 00-00-01_00:00:00
config_AM_timeSeriesStatsDaily_backward_output_offset: 00-00-01_00:00:00
AM_timeSeriesStatsMonthly:
config_AM_timeSeriesStatsMonthly_enable: false
config_AM_timeSeriesStatsMonthly_compute_on_startup: false
config_AM_timeSeriesStatsMonthly_write_on_startup: false
config_AM_timeSeriesStatsMonthly_compute_interval: 00-00-00_01:00:00
config_AM_timeSeriesStatsMonthly_output_stream: timeSeriesStatsMonthlyOutput
config_AM_timeSeriesStatsMonthly_restart_stream: timeSeriesStatsMonthlyRestart
config_AM_timeSeriesStatsMonthly_operation: avg
config_AM_timeSeriesStatsMonthly_reference_times: initial_time
config_AM_timeSeriesStatsMonthly_duration_intervals: repeat_interval
config_AM_timeSeriesStatsMonthly_repeat_intervals: reset_interval
config_AM_timeSeriesStatsMonthly_reset_intervals: 00-01-00_00:00:00
config_AM_timeSeriesStatsMonthly_backward_output_offset: 00-01-00_00:00:00
AM_timeSeriesStatsClimatology:
config_AM_timeSeriesStatsClimatology_enable: false
config_AM_timeSeriesStatsClimatology_compute_on_startup: false
config_AM_timeSeriesStatsClimatology_write_on_startup: false
config_AM_timeSeriesStatsClimatology_compute_interval: 00-00-00_01:00:00
config_AM_timeSeriesStatsClimatology_output_stream: timeSeriesStatsClimatologyOutput
config_AM_timeSeriesStatsClimatology_restart_stream: timeSeriesStatsClimatologyRestart
config_AM_timeSeriesStatsClimatology_operation: avg
config_AM_timeSeriesStatsClimatology_reference_times: 00-03-01_00:00:00;00-06-01_00:00:00;00-09-01_00:00:00;00-12-01_00:00:00
config_AM_timeSeriesStatsClimatology_duration_intervals: 00-03-00_00:00:00;00-03-00_00:00:00;00-03-00_00:00:00;00-03-00_00:00:00
config_AM_timeSeriesStatsClimatology_repeat_intervals: 01-00-00_00:00:00;01-00-00_00:00:00;01-00-00_00:00:00;01-00-00_00:00:00
config_AM_timeSeriesStatsClimatology_reset_intervals: 1000-00-00_00:00:00;1000-00-00_00:00:00;1000-00-00_00:00:00;1000-00-00_00:00:00
config_AM_timeSeriesStatsClimatology_backward_output_offset: 00-03-00_00:00:00
AM_timeSeriesStatsMonthlyMax:
config_AM_timeSeriesStatsMonthlyMax_enable: false
config_AM_timeSeriesStatsMonthlyMax_compute_on_startup: false
config_AM_timeSeriesStatsMonthlyMax_write_on_startup: false
config_AM_timeSeriesStatsMonthlyMax_compute_interval: 00-00-00_01:00:00
config_AM_timeSeriesStatsMonthlyMax_output_stream: timeSeriesStatsMonthlyMaxOutput
config_AM_timeSeriesStatsMonthlyMax_restart_stream: timeSeriesStatsMonthlyMaxRestart
config_AM_timeSeriesStatsMonthlyMax_operation: max
config_AM_timeSeriesStatsMonthlyMax_reference_times: initial_time
config_AM_timeSeriesStatsMonthlyMax_duration_intervals: repeat_interval
config_AM_timeSeriesStatsMonthlyMax_repeat_intervals: reset_interval
config_AM_timeSeriesStatsMonthlyMax_reset_intervals: 00-01-00_00:00:00
config_AM_timeSeriesStatsMonthlyMax_backward_output_offset: 00-01-00_00:00:00
AM_timeSeriesStatsMonthlyMin:
config_AM_timeSeriesStatsMonthlyMin_enable: false
config_AM_timeSeriesStatsMonthlyMin_compute_on_startup: false
config_AM_timeSeriesStatsMonthlyMin_write_on_startup: false
config_AM_timeSeriesStatsMonthlyMin_compute_interval: 00-00-00_01:00:00
config_AM_timeSeriesStatsMonthlyMin_output_stream: timeSeriesStatsMonthlyMinOutput
config_AM_timeSeriesStatsMonthlyMin_restart_stream: timeSeriesStatsMonthlyMinRestart
config_AM_timeSeriesStatsMonthlyMin_operation: min
config_AM_timeSeriesStatsMonthlyMin_reference_times: initial_time
config_AM_timeSeriesStatsMonthlyMin_duration_intervals: repeat_interval
config_AM_timeSeriesStatsMonthlyMin_repeat_intervals: reset_interval
config_AM_timeSeriesStatsMonthlyMin_reset_intervals: 00-01-00_00:00:00
config_AM_timeSeriesStatsMonthlyMin_backward_output_offset: 00-01-00_00:00:00
AM_timeSeriesStatsCustom:
config_AM_timeSeriesStatsCustom_enable: false
config_AM_timeSeriesStatsCustom_compute_on_startup: false
config_AM_timeSeriesStatsCustom_write_on_startup: false
config_AM_timeSeriesStatsCustom_compute_interval: 00-00-00_01:00:00
config_AM_timeSeriesStatsCustom_output_stream: timeSeriesStatsCustomOutput
config_AM_timeSeriesStatsCustom_restart_stream: timeSeriesStatsCustomRestart
config_AM_timeSeriesStatsCustom_operation: avg
config_AM_timeSeriesStatsCustom_reference_times: initial_time
config_AM_timeSeriesStatsCustom_duration_intervals: repeat_interval
config_AM_timeSeriesStatsCustom_repeat_intervals: reset_interval
config_AM_timeSeriesStatsCustom_reset_intervals: 00-00-07_00:00:00
config_AM_timeSeriesStatsCustom_backward_output_offset: 00-00-01_00:00:00
AM_pointwiseStats:
config_AM_pointwiseStats_enable: false
config_AM_pointwiseStats_compute_interval: output_interval
config_AM_pointwiseStats_output_stream: pointwiseStatsOutput
config_AM_pointwiseStats_compute_on_startup: true
config_AM_pointwiseStats_write_on_startup: true
AM_debugDiagnostics:
config_AM_debugDiagnostics_enable: false
config_AM_debugDiagnostics_compute_interval: output_interval
config_AM_debugDiagnostics_output_stream: debugDiagnosticsOutput
config_AM_debugDiagnostics_compute_on_startup: true
config_AM_debugDiagnostics_write_on_startup: true
config_AM_debugDiagnostics_check_state: false
AM_rpnCalculator:
config_AM_rpnCalculator_enable: false
config_AM_rpnCalculator_compute_on_startup: true
config_AM_rpnCalculator_write_on_startup: false
config_AM_rpnCalculator_compute_interval: 0010-00-00_00:00:00
config_AM_rpnCalculator_output_stream: none
config_AM_rpnCalculator_variable_a: layerThickness
config_AM_rpnCalculator_variable_b: areaCell
config_AM_rpnCalculator_variable_c: none
config_AM_rpnCalculator_variable_d: none
config_AM_rpnCalculator_variable_e: none
config_AM_rpnCalculator_variable_f: none
config_AM_rpnCalculator_variable_g: none
config_AM_rpnCalculator_variable_h: none
config_AM_rpnCalculator_expression_1: a b *
config_AM_rpnCalculator_expression_2: none
config_AM_rpnCalculator_expression_3: none
config_AM_rpnCalculator_expression_4: none
config_AM_rpnCalculator_output_name_1: volumeCell
config_AM_rpnCalculator_output_name_2: none
config_AM_rpnCalculator_output_name_3: none
config_AM_rpnCalculator_output_name_4: none
AM_transectTransport:
config_AM_transectTransport_enable: false
config_AM_transectTransport_compute_interval: output_interval
config_AM_transectTransport_output_stream: transectTransportOutput
config_AM_transectTransport_compute_on_startup: true
config_AM_transectTransport_write_on_startup: true
config_AM_transectTransport_transect_group: all
AM_eddyProductVariables:
config_AM_eddyProductVariables_enable: false
config_AM_eddyProductVariables_compute_interval: dt
config_AM_eddyProductVariables_output_stream: eddyProductVariablesOutput
config_AM_eddyProductVariables_compute_on_startup: true
config_AM_eddyProductVariables_write_on_startup: false
AM_mocStreamfunction:
config_AM_mocStreamfunction_enable: false
config_AM_mocStreamfunction_compute_interval: output_interval
config_AM_mocStreamfunction_output_stream: mocStreamfunctionOutput
config_AM_mocStreamfunction_compute_on_startup: true
config_AM_mocStreamfunction_write_on_startup: true
config_AM_mocStreamfunction_min_bin: -1e+34
config_AM_mocStreamfunction_max_bin: -1e+34
config_AM_mocStreamfunction_num_bins: 180
config_AM_mocStreamfunction_region_group: all
config_AM_mocStreamfunction_transect_group: all
AM_oceanHeatContent:
config_AM_oceanHeatContent_enable: false
config_AM_oceanHeatContent_compute_interval: output_interval
config_AM_oceanHeatContent_output_stream: oceanHeatContentOutput
config_AM_oceanHeatContent_compute_on_startup: true
config_AM_oceanHeatContent_write_on_startup: true
AM_mixedLayerHeatBudget:
config_AM_mixedLayerHeatBudget_enable: false
config_AM_mixedLayerHeatBudget_compute_interval: output_interval
config_AM_mixedLayerHeatBudget_output_stream: mixedLayerHeatBudgetOutput
config_AM_mixedLayerHeatBudget_compute_on_startup: true
config_AM_mixedLayerHeatBudget_write_on_startup: true
AM_sedimentFluxIndex:
config_AM_sedimentFluxIndex_enable: false
config_AM_sedimentFluxIndex_compute_on_startup: true
config_AM_sedimentFluxIndex_write_on_startup: true
config_AM_sedimentFluxIndex_compute_interval: output_interval
config_AM_sedimentFluxIndex_output_stream: sedimentFluxIndexOutput
config_AM_sedimentFluxIndex_directory: analysis_members
config_AM_sedimentFluxIndex_use_lat_lon_coords: true
AM_sedimentTransport:
config_AM_sedimentTransport_enable: false
config_AM_sedimentTransport_compute_on_startup: true
config_AM_sedimentTransport_write_on_startup: true
config_AM_sedimentTransport_compute_interval: output_interval
config_AM_sedimentTransport_output_stream: sedimentTransportOutput
config_AM_sedimentTransport_directory: analysis_members
config_AM_sedimentTransport_grain_size: 0.00025
config_AM_sedimentTransport_ws_formula: VanRijn1993
config_AM_sedimentTransport_bedld_formula: Soulsby-Damgaard
config_AM_sedimentTransport_SSC_ref_formula: Lee2004
config_AM_sedimentTransport_drag_coefficient: 0.0025
config_AM_sedimentTransport_erate: 0.0005
config_AM_sedimentTransport_tau_ce: 0.1
config_AM_sedimentTransport_tau_cd: 0.1
config_AM_sedimentTransport_Manning_coef: 0.022
config_AM_sedimentTransport_grain_porosity: 0.5
config_AM_sedimentTransport_water_density: 1020
config_AM_sedimentTransport_grain_density: 2650
config_AM_sedimentTransport_alpha: 0.01
config_AM_sedimentTransport_kinematic_viscosity: 1e-06
config_AM_sedimentTransport_vertical_diffusion_coefficient: 0.01
config_AM_sedimentTransport_bedload: true
config_AM_sedimentTransport_suspended: true
config_AM_sedimentTransport_use_lat_lon_coords: true
AM_harmonicAnalysis:
config_AM_harmonicAnalysis_enable: false
config_AM_harmonicAnalysis_compute_interval: output_interval
config_AM_harmonicAnalysis_start_delay: 20
config_AM_harmonicAnalysis_duration: 90
config_AM_harmonicAnalysis_output_stream: harmonicAnalysisOutput
config_AM_harmonicAnalysis_restart_stream: harmonicAnalysisRestart
config_AM_harmonicAnalysis_compute_on_startup: false
config_AM_harmonicAnalysis_write_on_startup: false
config_AM_harmonicAnalysis_use_M2: true
config_AM_harmonicAnalysis_use_S2: true
config_AM_harmonicAnalysis_use_N2: true
config_AM_harmonicAnalysis_use_K2: true
config_AM_harmonicAnalysis_use_K1: true
config_AM_harmonicAnalysis_use_O1: true
config_AM_harmonicAnalysis_use_Q1: true
config_AM_harmonicAnalysis_use_P1: true
AM_conservationCheck:
config_AM_conservationCheck_enable: false
config_AM_conservationCheck_compute_interval: dt
config_AM_conservationCheck_output_stream: conservationCheckOutput
config_AM_conservationCheck_compute_on_startup: false
config_AM_conservationCheck_write_on_startup: false
config_AM_conservationCheck_write_to_logfile: true
config_AM_conservationCheck_restart_stream: conservationCheckRestart
streams:
mesh:
type: input
filename_template: mesh.nc
input_interval: initial_only
input:
type: input
filename_template: init.nc
input_interval: initial_only
restart:
type: input;output
filename_template: restarts/restart.$Y-$M-$D_$h.$m.$s.nc
filename_interval: output_interval
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
input_interval: initial_only
output_interval: 0005_00:00:00
atmospheric_forcing:
type: input
filename_template: atmospheric_forcing.nc
filename_interval: none
packages: timeVaryingAtmosphericForcingPKG
input_interval: none
land_ice_forcing:
type: input
filename_template: land_ice_forcing.nc
filename_interval: none
packages: timeVaryingLandIceForcingPKG
input_interval: none
conservationCheckRestart:
type: input;output
filename_template: restarts/restart.AM.conservationCheck.$Y-$M-$D_$h.$m.$s.nc
filename_interval: output_interval
clobber_mode: replace_files
packages: conservationCheckAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
block_debug_output:
type: output
filename_template: output_debug_block_$B.nc
filename_interval: 1000-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
output_interval: 1000-00-00_00:00:00
contents:
- mesh
- tracers
- xtime
- normalVelocity
- layerThickness
- ssh
remap_testing:
type: output
filename_template: output/remap_test.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 00-01-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
output_interval: 0000_01:00:00
contents:
- mesh
- tracers
- xtime
- normalVelocity
- layerThickness
- layerThicknessLag
- ssh
- vertVelocityTop
KPP_testing:
type: output
filename_template: output/KPP_test.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 00-01-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
output_interval: 0000_01:00:00
contents:
- mesh
- tracers
- vertNonLocalFlux
- xtime
- zMid
- zTop
- velocityZonal
- velocityMeridional
- bulkRichardsonNumber
- bulkRichardsonNumberBuoy
- potentialDensity
- unresolvedShear
- boundaryLayerDepth
- boundaryLayerDepthEdge
- surfaceFrictionVelocity
- penetrativeTemperatureFluxOBL
- surfaceBuoyancyForcing
- windStressZonal
- windStressMeridional
- transportVelocityZonal
- transportVelocityMeridional
- RiTopOfCell
- vertViscTopOfCell
- vertDiffTopOfCell
output:
type: output
filename_template: output/output.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
output_interval: 0001_00:00:00
contents:
- mesh
- tracers
- layerThickness
- ssh
- maxLevelEdgeTop
- minLevelEdgeBot
- vertCoordMovementWeights
- edgeMask
- vertexMask
- cellMask
- refZMid
- refLayerThickness
- xtime
- zMid
- zTop
- kineticEnergyCell
- relativeVorticityCell
- areaCellGlobal
- areaEdgeGlobal
- areaTriangleGlobal
- volumeCellGlobal
- volumeEdgeGlobal
- CFLNumberGlobal
shortwave_forcing_data:
type: input
filename_template: shortwaveData.nc
packages: variableShortwave
input_interval: none
contents:
- xtime
- chlorophyllData
- zenithAngle
- clearSkyRadiation
forcing_data:
type: input
filename_template: forcing_data.nc
input_interval: initial_only
contents:
- tracersSurfaceRestoringFields
- tracersInteriorRestoringFields
- tracersExponentialDecayFields
- tracersIdealAgeFields
- tracersTTDFields
- forcing
- activeTracersPistonVelocity
- activeTracersSurfaceRestoringValue
- activeTracersInteriorRestoringRate
- activeTracersInteriorRestoringValue
- debugTracersPistonVelocity
- debugTracersSurfaceRestoringValue
- seaIcePressure
- atmosphericPressure
- windStressZonal
- windStressMeridional
- landIceSurfaceTemperature
- latentHeatFlux
- sensibleHeatFlux
- shortWaveHeatFlux
- evaporationFlux
- rainFlux
additional_output:
type: none
filename_template: output/additional_output.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
output_interval: 0001_00:00:00
contents:
- normalVelocity
- density
- pressure
- divergence
- viscosity
- vertViscTopOfEdge
- vertViscTopOfCell
- vertDiffTopOfCell
- BruntVaisalaFreqTop
- RiTopOfCell
- bulkRichardsonNumber
- vertAleTransportTop
- vertVelocityTop
real_world:
type: none
filename_template: output/real_world_variables.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
output_interval: 0001_00:00:00
contents:
- mesh
- velocityZonal
- velocityMeridional
- displacedDensity
- potentialDensity
- boundaryLayerDepth
- boundaryLayerDepthEdge
- indexBoundaryLayerDepth
- indexSurfaceLayerDepth
- surfaceFrictionVelocity
- windStressZonal
- windStressMeridional
- surfaceBuoyancyForcing
- seaIcePressure
- atmosphericPressure
Cartesian:
type: none
filename_template: output/Cartesian_variables.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
output_interval: 0001_00:00:00
contents:
- mesh
- velocityX
- velocityY
forcing:
type: none
filename_template: output/forcing_variables.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
output_interval: 0001_00:00:00
contents:
- mesh
- tracersSurfaceFlux
- tracersSurfaceValue
- surfaceVelocity
- SSHGradient
- vertNonLocalFlux
- landIceInterfaceTracers
- landIceBoundaryLayerTracers
- surfaceStressMagnitude
- surfaceStress
- surfaceThicknessFlux
- seaIceEnergy
- penetrativeTemperatureFlux
- fractionAbsorbed
- windStressZonal
- windStressMeridional
- latentHeatFlux
- sensibleHeatFlux
- longWaveHeatFluxUp
- longWaveHeatFluxDown
- seaIceHeatFlux
- icebergHeatFlux
- shortWaveHeatFlux
- evaporationFlux
- seaIceSalinityFlux
- seaIceFreshWaterFlux
- icebergFreshWaterFlux
- riverRunoffFlux
- iceRunoffFlux
- rainFlux
- snowFlux
- iceFraction
- windSpeed10m
- nAccumulatedCoupled
- landIceFraction
- landIceMask
- landIceFloatingMask
- landIceFloatingFraction
- landIceFrictionVelocity
- topDragMagnitude
- landIceFreshwaterFlux
- landIceHeatFlux
- bottomDrag
Gent_McWilliams_spherical:
type: none
filename_template: output/Gent_McWilliams_spherical_variables.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
output_interval: 0001_00:00:00
contents:
- mesh
- k33
- GMBolusVelocityZonal
- GMBolusVelocityMeridional
- normalGMBolusVelocity
- vertGMBolusVelocityTop
- gmStreamFuncTopOfEdge
Gent_McWilliams_Cartesian:
type: none
filename_template: output/Gent_McWilliams_Cartesian_variables.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
output_interval: 0001_00:00:00
contents:
- mesh
- k33
- eddyVelocityX
- eddyVelocityY
- normalGMBolusVelocity
- vertGMBolusVelocityTop
- gmStreamFuncTopOfEdge
- GMStreamFuncX
- GMStreamFuncY
pointLocationsInput:
type: input
filename_template: points.nc
input_interval: initial_only
contents:
- pointCellGlobalID
topographic_wave_drag:
type: input
filename_template: topographic_wave_drag.nc
input_interval: initial_only
contents:
- topographic_wave_drag
globalStatsOutput:
type: output
filename_template: analysis_members/globalStats.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
packages: globalStatsAMPKG
output_interval: 0000_01:00:00
contents:
- minGlobalStats
- maxGlobalStats
- sumGlobalStats
- rmsGlobalStats
- avgGlobalStats
- vertSumMinGlobalStats
- vertSumMaxGlobalStats
- xtime
- daysSinceStartOfSim
- volumeCellGlobal
- CFLNumberGlobal
surfaceAreaWeightedAveragesOutput:
type: output
filename_template: analysis_members/surfaceAreaWeightedAverages.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
precision: single
packages: surfaceAreaWeightedAveragesAMPKG
output_interval: 00-00-05_00:00:00
contents:
- minValueWithinOceanRegion
- maxValueWithinOceanRegion
- avgValueWithinOceanRegion
- xtime
waterMassCensusOutput:
type: output
filename_template: analysis_members/waterMassCensus.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
precision: single
packages: waterMassCensusAMPKG
output_interval: 00-00-05_00:00:00
contents:
- waterMassCensusTemperatureValues
- waterMassCensusSalinityValues
- waterMassFractionalDistribution
- potentialDensityOfTSDiagram
- zPositionOfTSDiagram
- waterMassCensusTemperatureValuesRegion
- waterMassCensusSalinityValuesRegion
- waterMassFractionalDistributionRegion
- potentialDensityOfTSDiagramRegion
- zPositionOfTSDiagramRegion
- xtime
- regionGroupNames
- regionNames
- nRegionsInGroup
- regionsInGroup
layerVolumeWeightedAverageOutput:
type: output
filename_template: analysis_members/layerVolumeWeightedAverage.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
precision: single
packages: layerVolumeWeightedAverageAMPKG
output_interval: 00-00-05_00:00:00
contents:
- minValueWithinOceanLayerRegion
- maxValueWithinOceanLayerRegion
- avgValueWithinOceanLayerRegion
- minValueWithinOceanVolumeRegion
- maxValueWithinOceanVolumeRegion
- avgValueWithinOceanVolumeRegion
- xtime
zonalMeanOutput:
type: output
filename_template: analysis_members/zonalMeans.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
precision: single
packages: zonalMeanAMPKG
output_interval: 0000_12:00:00
contents:
- tracersZonalMean
- xtime
- binCenterZonalMean
- binBoundaryZonalMean
- velocityZonalZonalMean
- velocityMeridionalZonalMean
- refZMid
- refBottomDepth
okuboWeissOutput:
type: output
filename_template: analysis_members/okuboWeiss.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
precision: single
packages: okuboWeissAMPKG
output_interval: 00-00-05_00:00:00
contents:
- mesh
- xtime
- okuboWeiss
- vorticity
- eddyID
meridionalHeatTransportOutput:
type: output
filename_template: analysis_members/meridionalHeatTransport.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
packages: meridionalHeatTransportAMPKG
output_interval: 0001_00:00:00
contents:
- xtime
- binBoundaryMerHeatTrans
- meridionalHeatTransportLatZ
- meridionalHeatTransportLat
- refZMid
- refBottomDepth
- regionGroupNames
- regionNames
- nRegionsInGroup
- regionsInGroup
- merHeatTransLatZRegion
- merHeatTransLatRegion
testComputeIntervalOutput:
type: output
filename_template: analysis_members/testComputeInterval.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
packages: testComputeIntervalAMPKG
output_interval: 00-00-01_00:00:00
contents:
- xtime
- testComputeIntervalCounter
highFrequencyOutput:
type: output
filename_template: analysis_members/highFrequencyOutput.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
packages: highFrequencyOutputAMPKG
output_interval: 00-00-05_00:00:00
contents:
- mesh
- activeTracersAtSurface
- activeTracersAt250m
- activeTracersAvgTopto0100
- activeTracersAvg0100to0250
- activeTracersAvg0250to0700
- activeTracersAvg0700to2000
- activeTracersAvg2000toBottom
- xtime
- kineticEnergyAtSurface
- ssh
- kineticEnergyAt250m
- relativeVorticityAt250m
- divergenceAt250m
- relativeVorticityAt250m
- barotropicSpeed
- columnIntegratedSpeed
- relativeVorticityVertexAt250m
- boundaryLayerDepth
- vertGMvelocitySFC
- vertTransportVelocitySFC
- vertVelSFC
- divergenceTransportVelAt250m
- vertGMvelocityAt250m
- vertTransportVelocityAt250m
- vertVelAt250m
- normalVelAt250m
- tangentialVelAt250m
- BruntVaisalaFreqTopAt250m
- windStressZonal
- windStressMeridional
- divergenceAtBottom
timeFiltersOutput:
type: output
filename_template: analysis_members/timeFilters.$Y-$M-$D_$h.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
packages: timeFiltersAMPKG
output_interval: 00-00-01_00:00:00
contents:
- xtime
- velocityZonalLowPass
- velocityMeridionalLowPass
timeFiltersRestart:
type: input;output
filename_template: restarts/timeFiltersRestart.$Y-$M-$D_$h.nc
filename_interval: output_interval
clobber_mode: truncate
packages: timeFiltersAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
contents:
- xtime
- normalVelocityLowPass
- normalVelocityHighPass
- normalVelocityFilterTest
lagrPartTrackOutput:
type: output
filename_template: analysis_members/lagrPartTrack.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
packages: lagrPartTrackAMPKG
output_interval: 0002_00:00:00
contents:
- xtime
- indexToParticleID
- currentBlock
- currentCell
- currentCellGlobalID
- xParticle
- yParticle
- zParticle
- lonParticle
- latParticle
- zLevelParticle
- xParticleReset
- yParticleReset
- zParticleReset
- zLevelParticleReset
- timeSinceReset
- resetTime
- numTimesReset
- buoyancyParticle
- verticalTreatment
- dtParticle
- indexLevel
- cellOwnerBlock
- transfered
- buoyancySurfaceValues
- buoyancySurfaceVelocityMeridional
- buoyancySurfaceVelocityZonal
- buoyancySurfaceDepth
lagrPartTrackRestart:
type: input;output
filename_template: restarts/lagrangianParticleTrackingRestart.$Y-$M-$D_$h.$m.$s.nc
filename_interval: output_interval
clobber_mode: truncate
packages: lagrPartTrackAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
contents:
- xtime
- indexToParticleID
- currentBlock
- currentCell
- xParticle
- yParticle
- zParticle
- zLevelParticle
- xParticleReset
- yParticleReset
- zParticleReset
- zLevelParticleReset
- currentBlockReset
- currentCellReset
- timeSinceReset
- resetTime
- numTimesReset
- buoyancyParticle
- verticalTreatment
- dtParticle
- indexLevel
- transfered
- buoyancySurfaceValues
lagrPartTrackInput:
type: input
filename_template: analysis_members/lagrangianParticleTrackingInput.nc
packages: lagrPartTrackAMPKG
input_interval: initial_only
contents:
- indexToParticleID
- currentBlock
- currentCell
- xParticle
- yParticle
- zParticle
- zLevelParticle
- xParticleReset
- yParticleReset
- zParticleReset
- zLevelParticleReset
- currentBlockReset
- currentCellReset
- resetTime
- buoyancyParticle
- verticalTreatment
- dtParticle
- indexLevel
- transfered
- buoyancySurfaceValues
lagrPartTrackRegions:
type: input
filename_template: analysis_members/lagrangianParticleTrackingRegions.nc
packages: lagrPartTrackAMPKG
input_interval: initial_only
contents:
- resetOutsideRegionMaskValue1
- resetInsideRegionMaskValue1
eliassenPalmOutput:
type: output
filename_template: analysis_members/eliassenPalm.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
packages: eliassenPalmAMPKG
output_interval: 00-00-01_00:00:00
contents:
- xtime
- potentialDensityMidRef
- potentialDensityTopRef
- nSamplesEA
- buoyancyMaskEA
- sigmaEA
- heightMidBuoyCoorEA
- heightMidBuoyCoorSqEA
- montgPotBuoyCoorEA
- montgPotGradZonalEA
- montgPotGradMeridEA
- heightMGradZonalEA
- heightMGradMeridEA
- uusigmaEA
- vvsigmaEA
- uvsigmaEA
- uvarpisigmaEA
- vvarpisigmaEA
- uTWA
- vTWA
- varpiTWA
- EPFT
- divEPFT
- ErtelPVFlux
- ErtelPVTendency
- ErtelPV
eliassenPalmRestart:
type: input;output
filename_template: restarts/eliassenPalm_restart.$Y-$M-$D.nc
filename_interval: output_interval
clobber_mode: truncate
packages: eliassenPalmAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
contents:
- xtime
- nSamplesEA
- buoyancyMaskEA
- sigmaEA
- heightMidBuoyCoorEA
- heightMidBuoyCoorSqEA
- montgPotBuoyCoorEA
- montgPotGradZonalEA
- montgPotGradMeridEA
- heightMGradZonalEA
- heightMGradMeridEA
- usigmaEA
- vsigmaEA
- varpisigmaEA
- uusigmaEA
- vvsigmaEA
- uvsigmaEA
- uvarpisigmaEA
- vvarpisigmaEA
mixedLayerDepthsOutput:
type: output
filename_template: analysis_members/mixedLayerDepths.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
packages: mixedLayerDepthsAMPKG
output_interval: 00-00-00_00:00:01
contents:
- mesh
- xtime
- tThreshMLD
- tGradMLD
- dGradMLD
regionalStatsDailyOutput:
type: output
filename_template: analysis_members/regionalStatsDaily.$Y-$M.nc
filename_interval: 00-01-00_00:00:00
clobber_mode: truncate
precision: single
packages: regionalStatsDailyAMPKG
output_interval: 00-00-01_00:00:00
contents:
- activeTracers
- tracersSurfaceValue
- ssh
regionalStatsWeeklyOutput:
type: output
filename_template: analysis_members/regionalStatsWeekly.$Y-$M.nc
filename_interval: 00-03-00_00:00:00
clobber_mode: truncate
precision: single
packages: regionalStatsWeeklyAMPKG
output_interval: 00-00-07_00:00:00
contents:
- activeTracers
- tracersSurfaceValue
- ssh
regionalStatsMonthlyOutput:
type: output
filename_template: analysis_members/regionalStatsMonthly.$Y.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
precision: single
packages: regionalStatsMonthlyAMPKG
output_interval: 00-01-00_00:00:00
contents:
- activeTracers
- tracersSurfaceValue
- ssh
regionalStatsCustomOutput:
type: output
filename_template: analysis_members/regionalStatsCustom.$Y-$M-$D.nc
filename_interval: 00-00-01_00:00:00
clobber_mode: truncate
precision: single
packages: regionalStatsCustomAMPKG
output_interval: 00-00-00_01:00:00
contents:
- activeTracers
- tracersSurfaceValue
- ssh
regionalMasksInput:
type: input
filename_template: restarts/masks.nc
input_interval: initial_only
contents:
- regions
timeSeriesStatsDailyRestart:
type: input;output
filename_template: restarts/mpaso.rst.am.timeSeriesStatsDaily.$Y-$M-$D_$S.nc
filename_interval: output_interval
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
packages: timeSeriesStatsDailyAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
timeSeriesStatsDailyOutput:
type: output
filename_template: analysis_members/mpaso.hist.am.timeSeriesStatsDaily.$Y-$M-$D.nc
filename_interval: 00-01-00_00:00:00
reference_time: 01-01-01_00:00:00
clobber_mode: truncate
useMissingValMask: 'true'
precision: single
io_type: pnetcdf
packages: timeSeriesStatsDailyAMPKG
output_interval: 00-00-01_00:00:00
contents:
- tracersSurfaceValue
- surfaceVelocity
- SSHGradient
- xtime
- ssh
- normalVelocity
- velocityZonal
- velocityMeridional
- vertVelocityTop
- normalTransportVelocity
- transportVelocityZonal
- transportVelocityMeridional
- vertTransportVelocityTop
timeSeriesStatsMonthlyRestart:
type: input;output
filename_template: restarts/mpaso.rst.am.timeSeriesStatsMonthly.$Y-$M-$D_$S.nc
filename_interval: output_interval
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
packages: timeSeriesStatsMonthlyAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
timeSeriesStatsMonthlyOutput:
type: output
filename_template: analysis_members/mpaso.hist.am.timeSeriesStatsMonthly.$Y-$M-$D.nc
filename_interval: 00-01-00_00:00:00
reference_time: 01-01-01_00:00:00
clobber_mode: truncate
useMissingValMask: 'true'
io_type: pnetcdf
packages: timeSeriesStatsMonthlyAMPKG
output_interval: 00-01-00_00:00:00
contents:
- tracers
- tracersSurfaceFlux
- avgValueWithinOceanRegion
- avgValueWithinOceanLayerRegion
- avgValueWithinOceanVolumeRegion
- minGlobalStats
- maxGlobalStats
- sumGlobalStats
- rmsGlobalStats
- avgGlobalStats
- vertSumMinGlobalStats
- vertSumMaxGlobalStats
- vertNonLocalFlux
- activeTracersTend
- activeTracerHorizontalAdvectionTendency
- activeTracerVerticalAdvectionTendency
- activeTracerVertMixTendency
- activeTracerHorMixTendency
- activeTracerSurfaceFluxTendency
- temperatureShortWaveTendency
- activeTracerNonLocalTendency
- landIceBoundaryLayerTracers
- landIceInterfaceTracers
- activeTracerForcingMLTend
- activeTracerHorMixMLTend
- activeTracerNonLocalMLTend
- activeTracerVertAdvectionMLTend
- activeTracerHorAdvectionMLTend
- activeTracerVertMixMLTend
- activeTracersML
- activeTracersTendML
- activeTracerVerticalAdvectionTopFlux
- activeTracerHorizontalAdvectionEdgeFlux
- totalFreshWaterTemperatureFlux
- daysSinceStartOfSim
- binBoundaryMerHeatTrans
- binBoundaryZonalMean
- ssh
- velocityMeridional
- velocityZonal
- layerThickness
- density
- potentialDensity
- windStressZonal
- windStressMeridional
- frazilLayerThicknessTendency
- meridionalHeatTransportLatZ
- meridionalHeatTransportLat
- tThreshMLD
- dThreshMLD
- normalVelocity
- vertVelocityTop
- zMid
- atmosphericPressure
- normalGMBolusVelocity
- vertGMBolusVelocityTop
- normalMLEvelocity
- vertMLEBolusVelocityTop
- GMBolusVelocityZonal
- GMBolusVelocityMeridional
- cGMphaseSpeed
- velocityZonalTimesTemperature_GM
- velocityMeridionalTimesTemperature_GM
- normalGMBolusVelocityTimesTemperature
- normalGMBolusVelocitySquared
- gmKappaScaling
- gmBolusKappa
- mocStreamvalLatAndDepthGM
- mocStreamvalLatAndDepthRegionGM
- penetrativeTemperatureFlux
- latentHeatFlux
- sensibleHeatFlux
- longWaveHeatFluxUp
- longWaveHeatFluxDown
- seaIceHeatFlux
- shortWaveHeatFlux
- frazilTemperatureTendency
- evaporationFlux
- seaIceSalinityFlux
- seaIceFreshWaterFlux
- riverRunoffFlux
- iceRunoffFlux
- rainFlux
- snowFlux
- bottomLayerShortwaveTemperatureFlux
- salinitySurfaceRestoringTendency
- areaCellGlobal
- areaEdgeGlobal
- areaTriangleGlobal
- volumeCellGlobal
- volumeEdgeGlobal
- CFLNumberGlobal
- vertDiffTopOfCell
- vertViscTopOfCell
- bulkRichardsonNumber
- boundaryLayerDepth
- columnIntegratedSpeed
- landIceFreshwaterFlux
- landIceFreshwaterFluxTotal
- frazilIceFreshwaterFlux
- landIceHeatFlux
- heatFluxToLandIce
- landIceFrictionVelocity
- mocStreamvalLatAndDepth
- mocStreamvalLatAndDepthRegion
- binBoundaryMocStreamfunction
- surfaceBuoyancyForcing
- tendLayerThickness
- boundaryLayerDepthSmooth
- pressureAdjustedSSH
- SSHSquared
- velocityZonalSquared
- velocityMeridionalSquared
- normalVelocitySquared
- velocityZonalTimesTemperature
- velocityMeridionalTimesTemperature
- normalVelocityTimesTemperature
- oceanHeatContentSfcToBot
- oceanHeatContentSfcTo700m
- oceanHeatContent700mTo2000m
- oceanHeatContent2000mToBot
- BruntVaisalaFreqTop
- bruntVaisalaFreqML
- icebergFreshWaterFlux
- icebergHeatFlux
timeSeriesStatsClimatologyOutput:
type: output
filename_template: analysis_members/mpaso.hist.am.timeSeriesStatsClimatology.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 01-01-01_00:00:00
clobber_mode: truncate
useMissingValMask: 'true'
precision: single
io_type: pnetcdf
packages: timeSeriesStatsClimatologyAMPKG
output_interval: 00-03-00_00:00:00
contents:
- tracersSurfaceValue
- surfaceVelocity
- SSHGradient
- xtime
- ssh
- normalVelocity
- velocityZonal
- velocityMeridional
- vertVelocityTop
- normalTransportVelocity
- transportVelocityZonal
- transportVelocityMeridional
- vertTransportVelocityTop
timeSeriesStatsClimatologyRestart:
type: input;output
filename_template: restarts/mpaso.rst.am.timeSeriesStatsClimatology.$Y-$M-$D_$S.nc
filename_interval: output_interval
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
packages: timeSeriesStatsClimatologyAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
timeSeriesStatsMonthlyMaxRestart:
type: input;output
filename_template: restarts/mpaso.rst.am.timeSeriesStatsMonthlyMax.$Y-$M-$D_$S.nc
filename_interval: output_interval
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
packages: timeSeriesStatsMonthlyMaxAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
timeSeriesStatsMonthlyMaxOutput:
type: output
filename_template: analysis_members/mpaso.hist.am.timeSeriesStatsMonthlyMax.$Y-$M-$D.nc
filename_interval: 00-01-00_00:00:00
reference_time: 01-01-01_00:00:00
clobber_mode: truncate
useMissingValMask: 'true'
precision: single
io_type: pnetcdf
packages: timeSeriesStatsMonthlyMaxAMPKG
output_interval: 00-01-00_00:00:00
contents:
- tracersSurfaceFlux
- daysSinceStartOfSim
- ssh
- windStressZonal
- windStressMeridional
- tThreshMLD
- dThreshMLD
- penetrativeTemperatureFlux
- latentHeatFlux
- sensibleHeatFlux
- longWaveHeatFluxUp
- longWaveHeatFluxDown
- seaIceHeatFlux
- icebergHeatFlux
- shortWaveHeatFlux
- evaporationFlux
- seaIceSalinityFlux
- seaIceFreshWaterFlux
- icebergFreshWaterFlux
- riverRunoffFlux
- iceRunoffFlux
- rainFlux
- snowFlux
- boundaryLayerDepth
- landIceFreshwaterFlux
- landIceFreshwaterFluxTotal
- frazilIceFreshwaterFlux
- landIceHeatFlux
- heatFluxToLandIce
- surfaceBuoyancyForcing
- boundaryLayerDepthSmooth
- SSHSquared
timeSeriesStatsMonthlyMinRestart:
type: input;output
filename_template: restarts/mpaso.rst.am.timeSeriesStatsMonthlyMin.$Y-$M-$D_$S.nc
filename_interval: output_interval
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
packages: timeSeriesStatsMonthlyMinAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
timeSeriesStatsMonthlyMinOutput:
type: output
filename_template: analysis_members/mpaso.hist.am.timeSeriesStatsMonthlyMin.$Y-$M-$D.nc
filename_interval: 00-01-00_00:00:00
reference_time: 01-01-01_00:00:00
clobber_mode: truncate
useMissingValMask: 'true'
precision: single
io_type: pnetcdf
packages: timeSeriesStatsMonthlyMinAMPKG
output_interval: 00-01-00_00:00:00
contents:
- tracersSurfaceFlux
- daysSinceStartOfSim
- ssh
- tThreshMLD
- dThreshMLD
- penetrativeTemperatureFlux
- latentHeatFlux
- sensibleHeatFlux
- longWaveHeatFluxUp
- longWaveHeatFluxDown
- seaIceHeatFlux
- icebergHeatFlux
- shortWaveHeatFlux
- evaporationFlux
- seaIceSalinityFlux
- seaIceFreshWaterFlux
- icebergFreshWaterFlux
- riverRunoffFlux
- iceRunoffFlux
- rainFlux
- snowFlux
- boundaryLayerDepth
- landIceFreshwaterFlux
- landIceFreshwaterFluxTotal
- frazilIceFreshwaterFlux
- landIceHeatFlux
- heatFluxToLandIce
- surfaceBuoyancyForcing
- boundaryLayerDepthSmooth
- pressureAdjustedSSH
- SSHSquared
timeSeriesStatsCustomOutput:
type: output
filename_template: analysis_members/mpaso.hist.am.timeSeriesStatsCustom.$Y-$M-$D.nc
filename_interval: 00-01-00_00:00:00
reference_time: 01-01-01_00:00:00
clobber_mode: truncate
useMissingValMask: 'true'
precision: single
io_type: pnetcdf
packages: timeSeriesStatsCustomAMPKG
output_interval: 00-00-07_00:00:00
contents:
- tracersSurfaceValue
- surfaceVelocity
- SSHGradient
- xtime
- ssh
- normalVelocity
- velocityZonal
- velocityMeridional
- vertVelocityTop
- normalTransportVelocity
- transportVelocityZonal
- transportVelocityMeridional
- vertTransportVelocityTop
timeSeriesStatsCustomRestart:
type: input;output
filename_template: restarts/mpaso.rst.am.timeSeriesStatsCustom.$Y-$M-$D_$S.nc
filename_interval: output_interval
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
packages: timeSeriesStatsCustomAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
pointwiseStatsOutput:
type: output
filename_template: analysis_members/pointwiseStats.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
packages: pointwiseStatsAMPKG
output_interval: 00-00-01_00:00:00
contents:
- tracers
- tracersSurfaceFlux
- pointCellGlobalID
- xtime
- latCell
- lonCell
- maxLevelCell
- layerThickness
debugDiagnosticsOutput:
type: output
filename_template: analysis_members/debugDiagnostics.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
packages: debugDiagnosticsAMPKG
output_interval: 00-00-01_00:00:00
contents:
- xtime
- rx1MaxCell
- globalRx1Max
transectTransportOutput:
type: output
filename_template: analysis_members/transectTransport.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
packages: transectTransportAMPKG
output_interval: 00-00-01_00:00:00
contents:
- xtime
- transectVolumeTransport
- transectVolumeTransportZ
eddyProductVariablesOutput:
type: output
filename_template: analysis_members/eddyProductVariables.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
packages: eddyProductVariablesAMPKG
output_interval: 99-00-00_00:00:00
contents:
- xtime
- SSHSquared
- velocityZonalSquared
- velocityMeridionalSquared
- velocityZonalTimesTemperature
- velocityMeridionalTimesTemperature
- velocityZonalTimesTemperature_GM
- velocityMeridionalTimesTemperature_GM
- normalVelocityTimesTemperature
- normalVelocitySquared
- velocityZonalTimesSalinity
- velocityMeridionalTimesSalinity
- normalVelocityTimesSalinity
- velocityZonalTimesSalinity_GM
- velocityMeridionalTimesSalinity_GM
mocStreamfunctionOutput:
type: output
filename_template: analysis_members/mocStreamfunction.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
packages: mocStreamfunctionAMPKG
output_interval: 00-00-01_00:00:00
contents:
- xtime
- mocStreamvalLatAndDepth
- mocStreamvalLatAndDepthRegion
- mocStreamvalLatAndDepthGM
- mocStreamvalLatAndDepthRegionGM
- mocStreamvalLatAndDepthMLE
- mocStreamvalLatAndDepthRegionMLE
- binBoundaryMocStreamfunction
- refBottomDepth
- regionGroupNames
- minMaxLatRegion
- regionNames
- nRegionsInGroup
- regionsInGroup
oceanHeatContentOutput:
type: output
filename_template: analysis_members/oceanHeatContent.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
packages: oceanHeatContentAMPKG
output_interval: 00-00-01_00:00:00
contents:
- xtime
- oceanHeatContentSfcToBot
- oceanHeatContentSfcTo700m
- oceanHeatContent700mTo2000m
- oceanHeatContent2000mToBot
mixedLayerHeatBudgetOutput:
type: output
filename_template: analysis_members/mixedLayerHeatBudget.$Y-$M-$D.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
packages: mixedLayerHeatBudgetAMPKG
output_interval: 00-00-01_00:00:00
contents:
- activeTracerForcingMLTend
- activeTracerHorMixMLTend
- activeTracerNonLocalMLTend
- activeTracerVertAdvectionMLTend
- activeTracerHorAdvectionMLTend
- activeTracerVertMixMLTend
- activeTracersML
- activeTracersTendML
- bruntVaisalaFreqML
- xtime
sedimentFluxIndexOutput:
type: output
filename_template: analysis_members/sedimentFluxIndex.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
precision: single
packages: sedimentFluxIndexAMPKG
output_interval: 00-00-00_00:01:00
contents:
- mesh
- xtime
- sedimentFluxIndexVAX
- sedimentFluxIndexVAY
- sedimentFluxIndexBX
- sedimentFluxIndexBY
sedimentTransportOutput:
type: output
filename_template: analysis_members/sedimentTransport.$Y-$M-$D_$h.$m.$s.nc
filename_interval: 01-00-00_00:00:00
clobber_mode: truncate
precision: single
packages: sedimentTransportAMPKG
output_interval: 00-00-00_00:01:00
contents:
- mesh
- xtime
- ssh
- velocityZonal
- velocityMeridional
- sedimentErosionFlux
- sedimentFallVelocity
- sedimentDepositionFlux
- sedimentFluxVAX
- sedimentFluxVAY
- sedimentFluxBX
- sedimentFluxBY
- sedimentBedloadX
- sedimentBedloadY
- sedimentBottomReferenceConcentration
- sedimentConcentration
harmonicAnalysisRestart:
type: input;output
filename_template: restarts/mpaso.rst.am.harmonicAnalysisRestart.$Y-$M-$D_$S.nc
filename_interval: output_interval
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
packages: harmonicAnalysisAMPKG
input_interval: initial_only
output_interval: stream:restart:output_interval
contents:
- leastSquaresLHSMatrix
- leastSquaresRHSVector
harmonicAnalysisOutput:
type: output
filename_template: analysis_members/harmonicAnalysis.nc
filename_interval: 01-00-00_00:00:00
reference_time: 0001-01-01_00:00:00
clobber_mode: truncate
precision: single
packages: harmonicAnalysisAMPKG
output_interval: 10000-00-00_00:00:00
contents:
- latCell
- lonCell
- decomposedConstituentAmplitude
- decomposedConstituentPhase
- M2Amplitude
- M2Phase
- S2Amplitude
- S2Phase
- N2Amplitude
- N2Phase
- K2Amplitude
- K2Phase
- K1Amplitude
- K1Phase
- O1Amplitude
- O1Phase
- Q1Amplitude
- Q1Phase
- P1Amplitude
- P1Phase
conservationCheckOutput:
type: output
filename_template: analysis_members/conservationCheck.nc
filename_interval: none
clobber_mode: replace_files
packages: conservationCheckAMPKG
output_interval: 00-00-00_01:00:00
contents:
- xtime
- initialEnergy
- finalEnergy
- energyChange
- netEnergyFlux
- absoluteEnergyError
- relativeEnergyError
- initialMass
- finalMass
- massChange
- netMassFlux
- absoluteMassError
- relativeMassError
- initialSalt
- finalSalt
- saltChange
- netSaltFlux
- absoluteSaltError
- relativeSaltError
- accumulatedLatentHeatFlux
- accumulatedSensibleHeatFlux
- accumulatedLongWaveHeatFluxUp
- accumulatedLongWaveHeatFluxDown
- accumulatedShortWaveHeatFlux
- accumulatedSeaIceHeatFlux
- accumulatedMeltingSnowHeatFlux
- accumulatedMeltingIceRunoffHeatFlux
- accumulatedRemovedIceRunoffHeatFlux
- accumulatedIcebergHeatFlux
- accumulatedFrazilHeatFlux
- accumulatedLandIceHeatFlux
- accumulatedLandIceFrazilHeatFlux
- accumulatedRainTemperatureFlux
- accumulatedEvapTemperatureFlux
- accumulatedSeaIceTemperatureFlux
- accumulatedRiverRunoffTemperatureFlux
- accumulatedIcebergTemperatureFlux
- accumulatedRainFlux
- accumulatedSnowFlux
- accumulatedEvaporationFlux
- accumulatedSeaIceFlux
- accumulatedRiverRunoffFlux
- accumulatedIceRunoffFlux
- accumulatedRemovedRiverRunoffFlux
- accumulatedRemovedIceRunoffFlux
- accumulatedIcebergFlux
- accumulatedFrazilFlux
- accumulatedLandIceFlux
- accumulatedLandIceFrazilFlux
- accumulatedSeaIceSalinityFlux
- accumulatedFrazilSalinityFlux
- initialCarbon
- finalCarbon
- carbonChange
- netCarbonFlux
- absoluteCarbonError
- relativeCarbonError
- accumulatedAbsoluteCarbonError
- accumulatedRelativeCarbonError
|
Thanks @hyungyukang! |
Checklist
Testingcomment in the PR documents testing used to verify the changes