Releases · E3SM-Project/polaris

Add list of authors to pyproject.toml by @altheaden in #246
Update to v0.5.0-alpha.1 by @xylar in #243
Add barotropic gyre task by @cbegeman in #241
Add convergence tasks for space and time only by @cbegeman in #236
Fix manufactured solution viz step by @xylar in #250
Updates related to Omega IOStreams by @xylar in #231
Support the Omega time coordinate by @xylar in #249
Fix the load script to reinstall polaris when needed by @xylar in #254
Add Omega support to Cosine Bell tests by @xylar in #242
Add a restart test to cosine bell by @xylar in #251
Add a cosine-bell decomposition test by @xylar in #253
Pre-commit updates and fixes by @altheaden in #258
Extend manufactured solution to del2 and del4 by @cbegeman in #234
Fix directory permissions not being updated by @altheaden in #259
Add pre-commit autoupdate workflow by @altheaden in #260
Use separate conda cache directories in CI by @altheaden in #261
Temporarily constrain dask by @xylar in #264
Add support for amdclang and amdclanggpu on Frontier by @xylar in #263
Add support for omega sphere transport tests by @cbegeman in #262
Fix graph file symlink in baroclinic channel RPE test by @xylar in #266
Fix inertial gravity wave test by @xylar in #267
Exclude latest uxarray 2025.01.0 by @xylar in #269
Fix refinement factors in cosine bell by @xylar in #268
Don't include v0.1.0 in the docs by @xylar in #271
Update Polaris logo by @xylar in #272
Update pre-commit and its dependencies by @github-actions in #273
Switch to mosaic for all plotting functionality by @andrewdnolan in #256
Drop support for Python 3.9 and add support for Python 3.13 by @altheaden in #265
Update pre-commit and its dependencies by @github-actions in #277
Update pre-commit and its dependencies by @github-actions in #279
Fix colormap limits for spherical viz by @cbegeman in #278
Remove most of user's quick start by @xylar in #280
Update omega pr suite by @cbegeman in #281
Update tests to support Omega time slices by @xylar in #276
Update pre-commit and its dependencies by @github-actions in #283

New Contributors

@andrewdnolan made their first contribution in #256

Full Changelog: 0.4.0...0.5.0

Contributors

xylar, cbegeman, and 2 other contributors

Assets 2

28 Jan 08:57

xylar

0.4.0

d60b194

v0.4.0

What's Changed

Update to 0.4.0-alpha.1 by @xylar in #204
Fix the bisect utility by @xylar in #206
Remove unused bashrc functions by @altheaden in #208
Cleanup configure_polaris_envs.py and deploy/shared.py by @altheaden in #209
Standardize styling for all references to Omega by @altheaden in #210
Add nvidia to chicoma-cpu by @xylar in #211
Add link to Omega CTest in Quick Start by @altheaden in #212
Fix deployment on unknown machines by @xylar in #214
Fix docs typos and add link to mache docs by @altheaden in #215
Change references from compass to polaris by @altheaden in #218
Remove polaris clean from check polaris commands by @altheaden in #217
Fix how yaml model config options are update by @xylar in #219
Bootstrap cleanup by @altheaden in #216
Add docstrings to deploy package by @altheaden in #220
Add support for python 3.12 by @altheaden in #222
Tweak behavior of CI workflows by @altheaden in #223
Add Althea as additional dependabot reviewer by @altheaden in #224
Better support for Omega in Polaris by @xylar in #221
Add additional flags to pip install command in docs and deployment by @altheaden in #226
Update E3SM-Project submodule by @xylar in #228
Set default model for mpas_to_yaml to mpas-ocean by @xylar in #227
Fixup partition file presence by @cbegeman in #225
Update pre-commit dependencies by @xylar in #230
Enhance spherical tracer transport test viz by @cbegeman in #233
Fixup graph paths for cached inputs by @cbegeman in #235
Set default time_integrator for Omega by @xylar in #232
Clean up the docs by @xylar in #238
Add map between MPAS-Ocean and Omega variables by @xylar in #237
Map time integrator for convergence tests by @cbegeman in #239
Remove git from polaris environment by @xylar in #240
Switch setup configuration to to pyproject.toml by @altheaden in #244
Fix small typo in ctest path by @altheaden in #245

Full Changelog: 0.3.0...0.4.0

Contributors

xylar, cbegeman, and altheaden

Assets 2

28 Jan 08:56

xylar

0.3.0

937c6eb

v0.3.0

What's Changed

Split spack software and libs by @xylar in #165
Add jigsaw-python as a submodule by @xylar in #166
Add metis and parmetis to spack build by @xylar in #162
Add MOAB to the spack build by @xylar in #176
Update Perlmutter support by @xylar in #167
Update scorpio to v1.4.2 by @xylar in #178
Add Frontier as a supported machine by @xylar in #168
Update Omega submodule by @xylar in #179
Fix slurm handling of allocatable cores by @xylar in #181
Fix cores_per_node for Frontier by @xylar in #180
Remove gnu with mvapich on Anvil by @xylar in #182
Fix libnetcdf in jigsaw build by @xylar in #184
Fix cores_per_node calculation on Compy and Anvil by @xylar in #185
Update to 0.3.0-alpha.1 by @xylar in #177
Fix conda install before Jigsaw build by @xylar in #186
Add utility for building Omega and running ctests by @xylar in #170
Bump pre-commit/action from 3.0.0 to 3.0.1 by @dependabot in #189
Switch the mesh used for Omega CTests by @xylar in #190
Fix visualization of edge quantities with periodic boundaries by @cbegeman in #150
Workaround for z-star minimum number of vertical levels by @cbegeman in #152
Fix omega ctest mesh by @xylar in #194
Update docs link to newer URL style by @altheaden in #195
Add c_stdlib to jigsaw build deps by @xylar in #196
Update to v0.3.0-alpha.2 by @xylar in #197
Set permissions for Omega CTest downloads by @xylar in #199
Cull ISOMIP+ planar base mesh by @xylar in #201
Don't smooth ISOMIP+ topography on base mesh by @xylar in #202
Add support for creating mapping files with mbtempest by @xylar in #203
Port ice_shelf_2d test cases by @cbegeman in #158
Add gpus-per-node to job scripts and resources by @xylar in #207

Full Changelog: 0.2.0...0.3.0

Contributors

xylar, cbegeman, and 2 other contributors

Assets 2

28 Jan 08:55

xylar

0.2.0

7bc4e12

v0.2.0

What's Changed

Update to v0.2.0 by @xylar in #103
Add a polaris logo by @xylar in #107
Modularization and cleanup by @altheaden in #106
Fix dependencies in inertial gravity wave convergence test by @altheaden in #105
Add timers to steps as they run in a suite or task by @xylar in #112
Rename TestCase --> Task by @xylar in #110
Remove test groups by @xylar in #111
Reorganize validation by @xylar in #113
Add support for shared steps by @xylar in #116
Reorganize tasks to use shared steps by @xylar in #117
New shared steps capability design doc by @cbegeman in #109
Update to mpas_tools v0.23.0 by @xylar in #121
Fix detecting step already added to task by @xylar in #122
Clean up RPE analysis step and framework by @xylar in #123
Updates for pyremap >= 1.1.0 by @xylar in #124
Add shared ocean framework for spherical convergence tests by @xylar in #119
Add support for shared config options by @xylar in #125
Raise error only at task level on baseline failure by @xylar in #128
Shared ocean spherical convergence analysis step by @cbegeman in #126
Use MPAS-Tools for great circle distance in cosine bell tests by @cbegeman in #127
Use common matplotlib style sheet in all ocean plots by @xylar in #129
Clean up and add method to spherical convergence analysis by @xylar in #130
Only print task baseline status if basline compared by @xylar in #133
Enhance shared convergence steps by @cbegeman in #131
Add geostrophic convergence test (Williamson Test 2) by @xylar in #120
Fix conversion to absolute paths in config files by @xylar in #136
Fix steps_to_run for shared config files by @xylar in #134
Fixes to polaris suite and geostrophic docs by @xylar in #137
Set config.filepath after loading new config options by @xylar in #138
Port sphere transport test group for ocean components by @cbegeman in #104
Use Separate geostrophic thresholds for h and norm. vel. by @xylar in #139
Drop python 3.8 by @xylar in #142
Switch spherical viz to use uxarray and holoviews by @xylar in #140
Clean up plot_horiz_field() by @xylar in #143
Allow multiple tasks to be set up with -t flag by @xylar in #135
Fix path to cached polaris data on morpheus by @xylar in #145
Port changes to grid_1d package from Compass by @xylar in #147
Allow patches to be reused in plot_horiz_field() by @xylar in #146
Fix typo in planar horiz viz by @xylar in #148
Add functions for computing and plotting transects by @xylar in #144
Fix issues with shared config files by @xylar in #157
Add steps for ISOMIP+ base and culled meshes by @xylar in #141
Remove mamba command and switch to Miniforge3 by @xylar in #161
Port ocean internal wave test by @cbegeman in #153
Add a version check to load script by @xylar in #156
Removing tracers in variable list that have been turned off by default by @darincomeau in #160
Use only Polaris release version is spack env name by @xylar in #164
Update morpheus spack build by @xylar in #169
Add dependabot for github actions by @xylar in #171
Fix dependabot yaml indentation by @xylar in #172
Bump actions/checkout from 3 to 4 by @dependabot in #173
Bump actions/cache from 3 to 4 by @dependabot in #175
Bump actions/setup-python from 3 to 5 by @dependabot in #174
Update Omega submodule by @xylar in #163

Full Changelog: 0.1.0...0.2.0

Contributors

darincomeau, xylar, and 3 other contributors

Assets 2

28 Jan 08:53

xylar

0.1.0

10d95b2

v0.1.0

What's Changed

Add pre-commit checks by @xylar in #1
Add a .gitignore by @xylar in #2
Add pull request template by @xylar in #3
Add basic docs by @xylar in #4
Build polaris and docs in github action by @xylar in #5
Fix pushing docs to gh-pages by @xylar in #6
Fix docs by @xylar in #7
Add a configure script and support files by @xylar in #8
Add config files for supported machines by @xylar in #9
Add the compass license file by @xylar in #10
Fix copying docs by @xylar in #11
Fix small README typo by @jhkennedy in #12
Add versions side bar by @xylar in #13
Port most of the compass framework by @xylar in #14
Add more documentation by @xylar in #15
Add MPAS-Ocean, OMEGA and MALI submodules by @xylar in #16
Add utilities from compass by @xylar in #17
Remove namelist and streams from cosine bell init by @xylar in #19
Add polaris cache command by @xylar in #18
Add ModelStep class by @xylar in #20
Add ocean docs to the User's Guide by @xylar in #21
Fix deprecated calls to importlib.resources by @xylar in #22
Add support for model config described by yaml files by @xylar in #23
Add ocean model descriptions to docs by @cbegeman in #24
General clean-up PR by @xylar in #26
Ocean resources from config options by @xylar in #29
Change how dynamic model configuration is update by @xylar in #28
Port the baroclinic channel test group from compass by @xylar in #27
Add test suite guidance to documentation by @cbegeman in #25
Fix name of configure_polaris_envs.py in docs by @xylar in #31
Update to polaris 0.1.0-alpha.3 by @xylar in #32
Add planar horizontal viz by @cbegeman in #33
Add job script to steps by @xylar in #36
Reorganize the framework and organization in the developer's guide by @xylar in #38
Add dependencies to Step class by @xylar in #39
Add mapping file step by @xylar in #40
Add global map plots by @xylar in #34
Adjust ny for baroclinic channel to give 500 km domain by @xylar in #37
Fix bug in changing permissions on downloaded files by @xylar in #42
Various pieces of clean-up to the docs by @xylar in #44
Use shorter imports for Component, TestGroup, etc. by @xylar in #43
Fix error when building docs on main after merge by @xylar in #47
Clean up cosine bell test by @xylar in #46
Clean up baroclinic channel by @xylar in #45
Add User's Guide template for test groups by @cbegeman in #41
Port single column test group by @cbegeman in #49
Add a tutorial for adding a new test group by @xylar in #48
Find netcdf/pnetcdf with env vars on Chicoma and PM by @xylar in #50
Fix single_column test in pr suite by @xylar in #51
Fixup quick-start and tutorial by @cbegeman in #55
Fixup tutorial by @cbegeman in #56
Make subdirectories for symlinks for input files by @xylar in #59
Explicitly specify nodes in srun calls by @xylar in #54
Add a MANIFEST.in by @xylar in #64
Fix check for inputs in subdirectories by @xylar in #63
Add shared single layer yaml file by @sbrus89 in #57
Clean up outdated format strings by @altheaden in #69
Switch MappingFileStep to be a command-line step by @xylar in #68
Rename steps_not_to_run and --no-steps by @altheaden in #73
Make ocean ntasks and min_tasks a multiple of 4 by @xylar in #52
Add surface forcing and restoring to single_column test group by @cbegeman in #66
Logger cleanup and clarification by @altheaden in #75
Update guidance on switching between branches by @xylar in #77
Check available parallel resources only once by @altheaden in #76
Separate creating parallel command and running command by @altheaden in #78
Add an ideal age tracer case to the single column test group by @katsmith133 in #60
Change algorithm for constraining resources by @altheaden in #79
Change cosine bell to be single layer by @lconlon in #67
Fix log filename for steps by @xylar in #82
Make versions of cosine bell with and without viz steps by @xylar in #65
Make pickle file of dependency an input by @altheaden in #80
Remove unused check_parallel_system function by @altheaden in #81
Get Slurm options in a separate function by @altheaden in #83
Add Inertial gravity wave test group by @sbrus89 in #62
Pull out common setup between run procedures by @altheaden in #84
Rename namelist implicit bottom drag namelist option by @xylar in #87
Ignore nonexistent step_after_run.pickle file by @altheaden in #86
Add manufactured solution test group by @cbegeman in #72
Fix equations in baroclinic channel User's Guide by @xylar in #88
Remove manufactured_soluiton test case from suites by @xylar in #92
Reformat command line help descriptions by @altheaden in #90
Update step inputs attribute with input filenames by @altheaden in #93
Fixup cosine bell test: Allow user changes to vert_levels cfg option by @cbegeman in #94
Add flynt package to linter for updating format strings by @altheaden in #74
Standardize step and test case names by @cbegeman in #96
Assume mesh variables only in mesh file by @cbegeman in #97
A few fixes to the docs by @xylar in #98
Add dependency in restart test case by @xylar in #95
Add sea ice components along with single column test case by @darincomeau in #71
Fix cosine bell viz step by @xylar in #100
Remove steps from steps_to_run in baroclinic_channel RPE by @xylar in #102
Get maxLevelCell from ds, not ds_mesh in viz by @xylar in #101
Make cell count heuristic by @altheaden in #99

New Contributors

@jhkennedy made their first contribution in #12
@sbrus89 made their first contribution in #57
@katsmith133 made their first contribution in #60
@lconlon made their fi...

Contributors

darincomeau, sbrus89, and 6 other contributors

Assets 2

Releases: E3SM-Project/polaris

v0.7.0

What's Changed

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v0.6.0

What's Changed

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v0.5.0

What's Changed

New Contributors

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v0.4.0

What's Changed

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v0.3.0

What's Changed

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v0.2.0

What's Changed

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v0.1.0

What's Changed

New Contributors

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