SCORPIO + PnetCDF - build and test #4
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| --- | |
| # | |
| # ========== SCORPIO testing workflow ============ | |
| # The current workflow, | |
| # 1) Checks out SCORPIO source | |
| # 2) Installs dependencies using conda : CMake, MPICH & PnetCDF | |
| # 3) Configures, builds and tests SCORPIO | |
| # The tests are run on a single node (with PnetCDF) | |
| # | |
| name: SCORPIO + PnetCDF - build and test | |
| on: # yamllint disable-line rule:truthy | |
| workflow_dispatch: | |
| inputs: | |
| branch_name: | |
| description: 'Branch to run the SCORPIO + PnetCDF tests' | |
| required: true | |
| default: 'main' | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build_and_test: | |
| runs-on: ubuntu-latest # Or other suitable runner | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: 3.9 # Specify your desired Python version | |
| channels: conda-forge,defaults # Specify your desired channels | |
| auto-activate-base: false # Prevent auto-activation of base env | |
| - name: Create and activate Conda environment | |
| shell: bash -l {0} # Use bash -l to ensure conda commands are available | |
| run: | | |
| conda create -n scorpio_env # Create environment | |
| conda activate scorpio_env # Activate environment | |
| conda install conda-forge::cmake | |
| conda install conda-forge::mpich \ | |
| conda-forge::mpich-mpicc conda-forge::mpich-mpicxx \ | |
| conda-forge::mpich-mpifort | |
| conda install conda-forge::libpnetcdf | |
| - name: Configure SCORPIO | |
| shell: bash -l {0} # Ensure environment is active for configure cmds | |
| run: | | |
| conda activate scorpio_env # Activate environment | |
| CC=mpicc CXX=mpicxx FC=mpif90 F77=mpif90 \ | |
| cmake -DWITH_PNETCDF:BOOL=TRUE \ | |
| -DCMAKE_BUILD_TYPE=Debug -DPIO_USE_MALLOC:BOOL=ON \ | |
| -DPIO_BUILD_TESTS:BOOL=ON -DPIO_ENABLE_EXAMPLES:BOOL=ON \ | |
| -DPIO_ENABLE_TESTS:BOOL=ON -DPLATFORM:STRING=linux-gnu \ | |
| -S . -B scorpio_build_dir -LH | |
| - name: Build SCORPIO | |
| shell: bash -l {0} # Ensure environment is active for build cmds | |
| run: | | |
| conda activate scorpio_env # Activate environment | |
| cmake --build scorpio_build_dir | |
| - name: Run SCORPIO tests | |
| shell: bash -l {0} # Ensure environment is active for test cmds | |
| run: | | |
| conda activate scorpio_env # Activate environment | |
| cd scorpio_build_dir | |
| make test |