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Merged
merged 8 commits into from
Nov 19, 2024
Merged

cam6_4_047: update config component to handle new compset names #1078

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04bcd98
update config component to handle new compset names
jedwards4b Jul 5, 2024
a955e13
remove the mct submodule stub
jedwards4b Nov 14, 2024
5fef0ae
Initial changes for 1850 climate chemistry compsets
fvitt Nov 15, 2024
02df169
remove the ndep settings
fvitt Nov 18, 2024
c1a670e
Merge remote-tracking branch 'jedwards4b/remove_mct_submodule' into u…
Nov 18, 2024
4622f7d
bring in use_cases from francis; remove mct
Nov 18, 2024
2e172ee
remove gases from fincl lists that are no longer available
peverwhee Nov 19, 2024
b9b727f
add changelog
peverwhee Nov 19, 2024
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1 change: 0 additions & 1 deletion bld/namelist_files/mozart_master_gas_drydep_list.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -77,7 +77,6 @@
ISOPNOOHB
ISOPNOOHD
ISOPOH
ISOPNO3
ISOPOOH
LIMON
MACR
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2 changes: 0 additions & 2 deletions bld/namelist_files/mozart_master_gas_wetdep_list.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -127,7 +127,6 @@
HOCL
HYAC
HYDRALD
ISOPNO3
ISOPOOH
MACR
MACRN
Expand Down Expand Up @@ -172,7 +171,6 @@
XHO2NO2
XONIT
XONITR
XISOPNO3
</list>

</gas_wetdep_list_definition>
48 changes: 48 additions & 0 deletions bld/namelist_files/use_cases/1850_trop_strat_t4s_cam7.xml
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@@ -0,0 +1,48 @@
<?xml version="1.0"?>

<namelist_defaults>

<!-- Initial conditions -->
<ncdata hgrid="ne30np4" nlev="93">atm/cam/inic/se/1850C_T4S_ne30pg3_spinup01.cam.i.0002-01-01_c241114.nc</ncdata>

<!-- Solar data -->
<solar_irrad_data_file>atm/cam/solar/SolarForcingCMIP6_18491230-23000102_c20200615.nc</solar_irrad_data_file>
<solar_data_type>FIXED</solar_data_type>
<solar_data_ymd>18500701</solar_data_ymd>

<!-- Ocean Emissions -->
<csw_time_type>CYCLICAL</csw_time_type>
<csw_cycle_yr>1850</csw_cycle_yr>

<!-- External forcing -->
<ext_frc_type>CYCLICAL</ext_frc_type>
<ext_frc_cycle_yr>1850</ext_frc_cycle_yr>
<ext_frc_specifier hgrid="ne30np4" npg="3">
'num_a1 -> $INPUTDATA_ROOT/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_num_so4_a1_anthro-ene_vertical_mol_175001-201412_ne30pg3_c20200103.nc',
'num_a1 -> $INPUTDATA_ROOT/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_num_a1_so4_contvolcano_vertical_850-5000_ne30pg3_c20200125.nc',
'num_a2 -> $INPUTDATA_ROOT/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_num_a2_so4_contvolcano_vertical_850-5000_ne30pg3_c20200125.nc',
'SO2 -> $INPUTDATA_ROOT/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_SO2_contvolcano_vertical_850-5000_ne30pg3_c20200125.nc',
'so4_a1 -> $INPUTDATA_ROOT/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_so4_a1_anthro-ene_vertical_mol_175001-201412_ne30pg3_c20200103.nc',
'so4_a1 -> $INPUTDATA_ROOT/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_so4_a1_contvolcano_vertical_850-5000_ne30pg3_c20200125.nc',
'so4_a2 -> $INPUTDATA_ROOT/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_so4_a2_contvolcano_vertical_850-5000_ne30pg3_c20200125.nc'
</ext_frc_specifier>

<!-- Surface emissions -->
<srf_emis_type>CYCLICAL</srf_emis_type>
<srf_emis_cycle_yr>1850</srf_emis_cycle_yr>

<!-- Lower boundary concentrations -->
<flbc_type>CYCLICAL</flbc_type>
<flbc_cycle_yr>1850</flbc_cycle_yr>
<flbc_file>atm/waccm/lb/LBC_17500116-25001216_CMIP6_SSP585_0p5degLat_c20200824.nc</flbc_file>
<flbc_list>
'CCL4', 'CF2CLBR', 'CF3BR', 'CFC11', 'CFC113', 'CFC12', 'CH3BR', 'CH3CCL3', 'CH3CL', 'CH4', 'CO2', 'H2',
'HCFC22', 'N2O', 'CFC114', 'CFC115', 'HCFC141B', 'HCFC142B', 'H2402', 'OCS', 'SF6', 'CFC11eq'
</flbc_list>

<!-- history output -->
<history_chemistry>.true.</history_chemistry>
<history_chemspecies_srf>.false.</history_chemspecies_srf>
<history_clubb>.false.</history_clubb>

</namelist_defaults>
4 changes: 2 additions & 2 deletions bld/namelist_files/use_cases/2000_trop_strat_vbs_cam6.xml
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Expand Up @@ -190,15 +190,15 @@
'WD_CH3CN', 'WD_CH3COCHO', 'WD_CH3COOH', 'WD_CH3COOOH', 'WD_CH3COCH3', 'WD_CH3OH', 'WD_CH3OOH', 'WD_CLONO2', 'WD_COF2', 'WD_COFCL',
'WD_EOOH', 'WD_GLYALD', 'WD_H2O2', 'WD_H2SO4', 'WD_HBR', 'WD_HCL', 'WD_HCN', 'WD_HCOOH', 'WD_HF',
'WD_HNO3', 'WD_HO2NO2', 'WD_HOBR', 'WD_HOCL', 'WD_HONITR', 'WD_HPALD', 'WD_HYAC', 'WD_HYDRALD', 'WD_IEPOX',
'WD_ISOPNITA', 'WD_ISOPNITB', 'WD_ISOPNO3', 'WD_ISOPNOOH', 'WD_ISOPOOH', 'WD_IVOC', 'WD_MACR', 'WD_MACROOH', 'WD_MEKOOH',
'WD_ISOPNITA', 'WD_ISOPNITB', 'WD_ISOPNOOH', 'WD_ISOPOOH', 'WD_IVOC', 'WD_MACR', 'WD_MACROOH', 'WD_MEKOOH',
'WD_MVK', 'WD_NC4CH2OH', 'WD_NC4CHO', 'WD_NDEP', 'WD_NH3', 'WD_NH4', 'WD_NHDEP', 'WD_NOA',
'WD_NTERPOOH', 'WD_ONITR', 'WD_PHENOOH', 'WD_POOH', 'WD_ROOH', 'WD_SO2', 'WD_SOAG0', 'WD_SOAG1', 'WD_SOAG2',
'WD_SOAG3', 'WD_SOAG4', 'WD_SVOC', 'WD_TERP2OOH', 'WD_TERPNIT', 'WD_TERPOOH', 'WD_TERPROD1', 'WD_TERPROD2', 'WD_TOLOOH',
'WD_XOOH', 'WD_XYLENOOH', 'WD_XYLOLOOH', 'DF_ALKNIT', 'DF_ALKOOH', 'DF_BENZOOH', 'DF_BZOOH', 'DF_C2H5OH', 'DF_C2H5OOH',
'DF_C3H7OOH', 'DF_C6H5OOH', 'DF_CH2O', 'DF_CH3CHO', 'DF_CH3CN', 'DF_CH3COCH3', 'DF_CH3COCHO', 'DF_CH3COOH', 'DF_CH3COOOH',
'DF_CH3OH', 'DF_CH3OOH', 'DF_CO', 'DF_EOOH', 'DF_GLYALD', 'DF_H2O2', 'DF_H2SO4', 'DF_HCN', 'DF_HCOOH',
'DF_HNO3', 'DF_HO2NO2', 'DF_HONITR', 'DF_HPALD', 'DF_HYAC', 'DF_HYDRALD', 'DF_IEPOX', 'DF_ISOPNITA', 'DF_ISOPNITB',
'DF_ISOPNO3', 'DF_ISOPNOOH', 'DF_ISOPOOH', 'DF_IVOC', 'DF_MACROOH', 'DF_MEKOOH', 'DF_MPAN', 'DF_NC4CH2OH', 'DF_NC4CHO',
'DF_ISOPNOOH', 'DF_ISOPOOH', 'DF_IVOC', 'DF_MACROOH', 'DF_MEKOOH', 'DF_MPAN', 'DF_NC4CH2OH', 'DF_NC4CHO',
'dry_deposition_NHx_as_N', 'DF_NH3', 'DF_NH4', 'DF_NO', 'DF_NO2', 'DF_NOA', 'DF_NTERPOOH', 'DF_O3', 'DF_ONITR',
'DF_PAN', 'DF_PHENOOH', 'DF_POOH', 'DF_ROOH', 'DF_SO2', 'DF_SOAG0', 'DF_SOAG1', 'DF_SOAG2', 'DF_SOAG3',
'DF_SOAG4', 'DF_SVOC', 'DF_TERP2OOH', 'DF_TERPNIT', 'DF_TERPOOH', 'DF_TERPROD1', 'DF_TERPROD2', 'DF_TOLOOH', 'DF_XOOH',
Expand Down
4 changes: 2 additions & 2 deletions bld/namelist_files/use_cases/2010_trop_strat_vbs_cam6.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -381,15 +381,15 @@
'WD_CH3CN', 'WD_CH3COCHO', 'WD_CH3COOH', 'WD_CH3COOOH', 'WD_CH3COCH3', 'WD_CH3OH', 'WD_CH3OOH', 'WD_CLONO2', 'WD_COF2', 'WD_COFCL',
'WD_EOOH', 'WD_GLYALD', 'WD_H2O2', 'WD_H2SO4', 'WD_HBR', 'WD_HCL', 'WD_HCN', 'WD_HCOOH', 'WD_HF',
'WD_HNO3', 'WD_HO2NO2', 'WD_HOBR', 'WD_HOCL', 'WD_HONITR', 'WD_HPALD', 'WD_HYAC', 'WD_HYDRALD', 'WD_IEPOX',
'WD_ISOPNITA', 'WD_ISOPNITB', 'WD_ISOPNO3', 'WD_ISOPNOOH', 'WD_ISOPOOH', 'WD_IVOC', 'WD_MACR', 'WD_MACROOH', 'WD_MEKOOH',
'WD_ISOPNITA', 'WD_ISOPNITB', 'WD_ISOPNOOH', 'WD_ISOPOOH', 'WD_IVOC', 'WD_MACR', 'WD_MACROOH', 'WD_MEKOOH',
'WD_MVK', 'WD_NC4CH2OH', 'WD_NC4CHO', 'WD_NDEP', 'WD_NH3', 'WD_NH4', 'WD_NHDEP', 'WD_NOA',
'WD_NTERPOOH', 'WD_ONITR', 'WD_PHENOOH', 'WD_POOH', 'WD_ROOH', 'WD_SO2', 'WD_SOAG0', 'WD_SOAG1', 'WD_SOAG2',
'WD_SOAG3', 'WD_SOAG4', 'WD_SVOC', 'WD_TERP2OOH', 'WD_TERPNIT', 'WD_TERPOOH', 'WD_TERPROD1', 'WD_TERPROD2', 'WD_TOLOOH',
'WD_XOOH', 'WD_XYLENOOH', 'WD_XYLOLOOH', 'DF_ALKNIT', 'DF_ALKOOH', 'DF_BENZOOH', 'DF_BZOOH', 'DF_C2H5OH', 'DF_C2H5OOH',
'DF_C3H7OOH', 'DF_C6H5OOH', 'DF_CH2O', 'DF_CH3CHO', 'DF_CH3CN', 'DF_CH3COCH3', 'DF_CH3COCHO', 'DF_CH3COOH', 'DF_CH3COOOH',
'DF_CH3OH', 'DF_CH3OOH', 'DF_CO', 'DF_EOOH', 'DF_GLYALD', 'DF_H2O2', 'DF_H2SO4', 'DF_HCN', 'DF_HCOOH',
'DF_HNO3', 'DF_HO2NO2', 'DF_HONITR', 'DF_HPALD', 'DF_HYAC', 'DF_HYDRALD', 'DF_IEPOX', 'DF_ISOPNITA', 'DF_ISOPNITB',
'DF_ISOPNO3', 'DF_ISOPNOOH', 'DF_ISOPOOH', 'DF_IVOC', 'DF_MACROOH', 'DF_MEKOOH', 'DF_MPAN', 'DF_NC4CH2OH', 'DF_NC4CHO',
'DF_ISOPNOOH', 'DF_ISOPOOH', 'DF_IVOC', 'DF_MACROOH', 'DF_MEKOOH', 'DF_MPAN', 'DF_NC4CH2OH', 'DF_NC4CHO',
'dry_deposition_NHx_as_N', 'DF_NH3', 'DF_NH4', 'DF_NO', 'DF_NO2', 'DF_NOA', 'DF_NTERPOOH', 'DF_O3', 'DF_ONITR',
'DF_PAN', 'DF_PHENOOH', 'DF_POOH', 'DF_ROOH', 'DF_SO2', 'DF_SOAG0', 'DF_SOAG1', 'DF_SOAG2', 'DF_SOAG3',
'DF_SOAG4', 'DF_SVOC', 'DF_TERP2OOH', 'DF_TERPNIT', 'DF_TERPOOH', 'DF_TERPROD1', 'DF_TERPROD2', 'DF_TOLOOH', 'DF_XOOH',
Expand Down
0 ...es/use_cases/hist_trop_strat_ts4_cam7.xml → ...es/use_cases/hist_trop_strat_t4s_cam7.xml
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File renamed without changes.
23 changes: 12 additions & 11 deletions cime_config/config_component.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -232,14 +232,14 @@
<value compset="1850_CAM60%WCTS" >waccm_tsmlt_1850_cam6</value>
<value compset="1850_CAM60%WCCM" >waccm_ma_1850_cam6</value>
<value compset="1850_CAM60%WCSC" >waccm_sc_1850_cam6</value>
<value compset="1850_CAM70%LT" >1850_cam_lt</value>
<value compset="1850_CAM70%MT" >1850_cam_mt</value>
<value compset="1850[CE]?_CAM70%LT" >1850_cam_lt</value>
<value compset="1850[CE]?_CAM70%MT" >1850_cam_mt</value>

<value compset="2000_CAM40%TMOZ" >2000_cam4_trop_chem</value>
<value compset="2000_CAM40%WXIE" >waccmxie_ma_2000_cam4</value>
<value compset="2000_CAM40%WX_" >waccmx_ma_2000_cam4</value>

<value compset="2000_CAM70" >2000_cam6</value>
<value compset="2000[CE]?_CAM70" >2000_cam6</value>
<value compset="2000_CAM60" >2000_cam6</value>
<value compset="2000_CAM60%WCTS" >waccm_tsmlt_2000_cam6</value>
<value compset="2000_CAM60%WCCM" >waccm_ma_2000_cam6</value>
Expand Down Expand Up @@ -279,7 +279,8 @@
<value compset="HIST_CAM60%WCMD" >waccm_ma_hist_cam6</value>
<value compset="HIST_CAM40%WCMD" >waccm_ma_hist_cam4</value>
<value compset="HIST(C_|E_|_)CAM.*CT1S">hist_trop_strat_vbs_cam6</value>
<value compset="HISTC_CAM7.*CT4S" >hist_trop_strat_ts4_cam7</value>
<value compset="HIST[CE]?_CAM7.*CT4S" >hist_trop_strat_t4s_cam7</value>
<value compset="1850[CE]?_CAM7.*CT4S" >1850_trop_strat_t4s_cam7</value>
<value compset="HIST_CAM60%.*CT[12]S%NUDG">hist_trop_strat_nudged_cam6</value>
<value compset="HIST_CAM60%CVBSX" >hist_trop_strat_vbsext_cam6</value>
<value compset="HIST_CAM60%CFIRE" >hist_trop_strat_vbsfire_cam6</value>
Expand Down Expand Up @@ -392,9 +393,9 @@
<type>char</type>
<default_value>2000</default_value>
<values match="last">
<value compset="^1850_">1850</value>
<value compset="^1850[CE]?_">1850</value>
<value compset="^2010_">2010</value>
<value compset="^HIST_">1850</value>
<value compset="^HIST[CE]?_">1850</value>
<value compset="^SSP" >2015</value>
</values>
<group>run_component_cam</group>
Expand All @@ -407,8 +408,8 @@
<default_value>2000</default_value>
<values match="last">
<value compset="^2010_">2010</value>
<value compset="^1850_">1850</value>
<value compset="^HIST_">2015</value>
<value compset="^1850[CE]?_">1850</value>
<value compset="^HIST[CE]?_">2015</value>
<value compset="^SSP" >2101</value>
</values>
<group>run_component_cam</group>
Expand All @@ -420,7 +421,7 @@
<type>char</type>
<default_value>1</default_value>
<values match="last">
<value compset="^HIST_">1850</value>
<value compset="^HIST[CE]?_">1850</value>
<value compset="^SSP" >2015</value>
</values>
<group>run_component_cam</group>
Expand All @@ -437,10 +438,10 @@
<value compset="^SSP126_">$DIN_LOC_ROOT/lnd/clm2/ndepdata/fndep_clm_f09_g17.CMIP6-SSP1-2.6-WACCM_1849-2101_monthly_c191007.nc</value>
<value compset="^SSP245_">$DIN_LOC_ROOT/lnd/clm2/ndepdata/fndep_clm_f09_g17.CMIP6-SSP2-4.5-WACCM_1849-2101_monthly_c191007.nc</value>
<value compset="^SSP370_">$DIN_LOC_ROOT/lnd/clm2/ndepdata/fndep_clm_SSP370_b.e21.BWSSP370cmip6.f09_g17.CMIP6-SSP3-7.0-WACCM.002_1849-2101_monthly_0.9x1.25_c211216.nc</value>
<value compset="^HIST" >$DIN_LOC_ROOT/lnd/clm2/ndepdata/fndep_clm_hist_b.e21.BWHIST.f09_g17.CMIP6-historical-WACCM.ensmean_1849-2015_monthly_0.9x1.25_c180926.nc</value>
<value compset="^HIST[CE]?_" >$DIN_LOC_ROOT/lnd/clm2/ndepdata/fndep_clm_hist_b.e21.BWHIST.f09_g17.CMIP6-historical-WACCM.ensmean_1849-2015_monthly_0.9x1.25_c180926.nc</value>
<value compset="^2000_" >$DIN_LOC_ROOT/lnd/clm2/ndepdata/fndep_clm_hist_b.e21.BWHIST.f09_g17.CMIP6-historical-WACCM.ensmean_1849-2015_monthly_0.9x1.25_c180926.nc</value>
<value compset="^2010_" >$DIN_LOC_ROOT/lnd/clm2/ndepdata/fndep_clm_hist_b.e21.BWHIST.f09_g17.CMIP6-historical-WACCM.ensmean_1849-2015_monthly_0.9x1.25_c180926.nc</value>
<value compset="^1850_" >$DIN_LOC_ROOT/lnd/clm2/ndepdata/fndep_clm_WACCM6_CMIP6piControl001_y21-50avg_1850monthly_0.95x1.25_c180802.nc</value>
<value compset="^1850[CE]?_" >$DIN_LOC_ROOT/lnd/clm2/ndepdata/fndep_clm_WACCM6_CMIP6piControl001_y21-50avg_1850monthly_0.95x1.25_c180802.nc</value>
</values>
<group>run_component_cam</group>
<file>env_run.xml</file>
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1 change: 0 additions & 1 deletion libraries/mct
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Submodule mct deleted from 82b007
2 changes: 1 addition & 1 deletion src/cpl/nuopc/atm_stream_ndep.F90
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Original file line number Diff line number Diff line change
Expand Up @@ -118,7 +118,7 @@ subroutine stream_ndep_init(model_mesh, model_clock, rc)
if (ierr /= 0) call endrun(trim(subname)//": FATAL: mpi_bcast: stream_ndep_year_align")

! Check whether the stream is being used.
if (stream_ndep_data_filename == ' ') then
if (stream_ndep_data_filename == ' '.or.stream_ndep_data_filename == 'UNSET') then
use_ndep_stream = .false.
if (masterproc) then
write(iulog,'(a)') ' '
Expand Down