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Add cmip7 workflow amon basic #266

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a1c595a
adds template.amon and new cmip7 workflow
jedwards4b Oct 1, 2025
8c133eb
add Lmon
jedwards4b Oct 21, 2025
af21eb7
update templates
jedwards4b Oct 22, 2025
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102 changes: 22 additions & 80 deletions machines/config_workflow.xml
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Expand Up @@ -62,24 +62,34 @@
</job>
</workflow_jobs>

<workflow_jobs id="timeseries" prepend="default">
<job name="timeseries">
<template>$ENV{POSTPROCESS_PATH}/timeseries/template.timeseries</template>
<workflow_jobs id="cmip7" prepend="default">
<job name="amon">
<template>template.amon</template>
<dependency>case.st_archive</dependency>
<prereq>1</prereq>
<runtime_parameters MACH="aleph">
<task_count>200</task_count>
<tasks_per_node>10</tasks_per_node>
<walltime>12:00:00</walltime>
<prereq>True</prereq>
<runtime_parameters MACH="derecho">
<task_count>128</task_count>
<tasks_per_node>128</tasks_per_node>
<mem_per_task>10</mem_per_task>
<walltime>0:40:00</walltime>
</runtime_parameters>
<runtime_parameters MACH="cheyenne">
<task_count>72</task_count>
<tasks_per_node>9</tasks_per_node>
<walltime>0:20:00</walltime>
</job>
<job name="lmon">
<template>template.Lmon</template>
<dependency>case.st_archive</dependency>
<prereq>True</prereq>
<runtime_parameters MACH="derecho">
<task_count>4</task_count>
<tasks_per_node>128</tasks_per_node>
<mem_per_task>10</mem_per_task>
<walltime>0:40:00</walltime>
</runtime_parameters>
</job>

</workflow_jobs>



<!-- THIS CREATES THE JOB FOR THE LAUNCHING OF THE SMARTSIM ORCHESTRATOR -->
<workflow_jobs id="smartsim_db" prepend="default">
<job name="smartsim_db"> <!-- name here corresponds with scripts -->
Expand All @@ -94,72 +104,4 @@
</job>
</workflow_jobs>

<workflow_jobs id="timeseries_transfer" prepend="timeseries">
<job name="timeseries_transfer">
<template>$ENV{POSTPROCESS_PATH}/timeseries/template.timeseries_transfer</template>
<dependency>timeseries</dependency>
<prereq>1</prereq>
<runtime_parameters>
<task_count>1</task_count>
<tasks_per_node>1</tasks_per_node>
<walltime>1:00:00</walltime>
</runtime_parameters>
</job>
</workflow_jobs>
<workflow_jobs id="diagnostics" prepend="timeseries">
<job name="xconform">
<template>$CASEROOT/postprocess/xconform</template>
<dependency>timeseriesL</dependency>
<prereq>$CASEROOT/postprocess/pp_config -value --get STANDARDIZE_TIMESERIES</prereq>
</job>

<job name="atm_averages">
<template>$CASEROOT/postprocess/atm_averages</template>
<dependency>timeseries or case.st_archive</dependency>
<prereq>$CASEROOT/postprocess/pp_config -value --get GENERATE_AVGS_ATM</prereq>
</job>

<job name="lnd_averages">
<template>$CASEROOT/postprocess/lnd_averages</template>
<dependency>:lnd_avg(args)
timeseries or case.st_archive</dependency>
<prereq>$CASEROOT/postprocess/pp_config -value --get GENERATE_AVGS_ATM</prereq>
</job>

<job name="ice_averages">
<template>$CASEROOT/postprocess/ice_averages</template>
<dependency>timeseries or case.st_archive</dependency>
<prereq>$CASEROOT/postprocess/pp_config -value --get GENERATE_AVGS_ATM</prereq>
</job>


<job name="ocn_averages">
<template>$CASEROOT/postprocess/ocn_averages</template>
<dependency>timeseries or case.st_archive</dependency>
<prereq>$CASEROOT/postprocess/pp_config -value --get GENERATE_AVGS_ATM</prereq>
</job>

<job name="atm_diagnostics">
<template>$CASEROOT/postprocess/atm_diagnostics</template>
<dependency>atm_averages</dependency>
<prereq>$CASEROOT/postprocess/pp_config -value --get GENERATE_AVGS_ATM</prereq>
</job>

<job name="lnd_diagnostics">
<template>$CASEROOT/postprocess/lnd_diagnostics</template>
<dependency>lnd_averages</dependency>
<prereq>$CASEROOT/postprocess/pp_config -value --get GENERATE_AVGS_ATM</prereq>
</job>
<job name="ice_diagnostics">
<template>$CASEROOT/postprocess/ice_diagnostics</template>
<dependency>ice_averages</dependency>
<prereq>$CASEROOT/postprocess/pp_config -value --get GENERATE_AVGS_ATM</prereq>
</job>
<job name="ocn_diagnostics">
<template>$CASEROOT/postprocess/ocn_diagnostics</template>
<dependency>ocn_averages</dependency>
<prereq>$CASEROOT/postprocess/pp_config -value --get GENERATE_AVGS_ATM</prereq>
</job>

</workflow_jobs>
</config_workflow>
2 changes: 1 addition & 1 deletion machines/derecho/config_machines.xml
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Expand Up @@ -135,7 +135,7 @@
<!-- DEBUG FALSE and then true: with any MPI and NOT gnu compiler -->
<modules DEBUG="FALSE" compiler="!gnu">
<command name="load">parallelio/2.6.6</command>
<command name="load">esmf/8.8.1</command>
<command name="load">esmf/8.9.0</command>
</modules>
<modules DEBUG="TRUE" compiler="!gnu">
<command name="load">parallelio/2.6.6-debug</command>
Expand Down
7 changes: 7 additions & 0 deletions machines/template.Lmon
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@@ -0,0 +1,7 @@
#!/usr/bin/env bash
{{ batchdirectives }}

module load conda
conda activate /glade/work/cmip7/conda-envs/CMOR

python /glade/work/cmip7/cmip7-prep/scripts/monthly_cmor.py --realm lnd --workers $NCPUS --caseroot {{ caseroot }} --cimeroot {{ cimeroot }}
7 changes: 7 additions & 0 deletions machines/template.amon
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#!/usr/bin/env bash
{{ batchdirectives }}

module load conda
conda activate /glade/work/cmip7/conda-envs/CMOR

python /glade/work/cmip7/cmip7-prep/scripts/monthly_cmor.py --realm atm --workers $NCPUS --caseroot {{ caseroot }} --cimeroot {{ cimeroot }}
7 changes: 7 additions & 0 deletions machines/template.lmon
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@@ -0,0 +1,7 @@
#!/usr/bin/env bash
{{ batchdirectives }}

module load conda
conda activate /glade/work/cmip7/conda-envs/CMOR

python /glade/work/cmip7/cmip7-prep/scripts/monthly_cmor.py --realm lnd --workers 32 --caseroot {{ caseroot }} --cimeroot {{ cimeroot }}