update mom6_bathy version #73

	# This workflow will install CESM, create visualCaseGen conda env, and run all CI tests.

	name: visualCaseGen CI

	on:
	push:
	branches: [ "main", "ci" ]
	pull_request:
	branches: [ "main", "ci" ]

	jobs:
	ci_tests:
	name: visualCaseGen CI tests
	runs-on: "ubuntu-latest"
	defaults:
	run:
	shell: bash -el {0}
	steps:

	- name: Install xmllint
	run: sudo apt-get install -y libxml2-utils
	- name: Checkout VisualCaseGen to temp folder
	uses: actions/checkout@v4
	with:
	submodules: recursive
	path: VCGTEMP
	# clone CESM
	- name: Checkout CESM
	uses: actions/checkout@v4
	with:
	repository: alperaltuntas/CESM
	ref: cesm3_0_beta03_gui
	path: CESM
	#submodules: recursive

	# Run git-fleximod
	- name: Checkout CESM submodules
	env:
	GIT_CLONE_PROTECTION_ACTIVE: false
	run: \|
	cd CESM
	./bin/git-fleximod update

	# Copy the checked out visualCaseGen branch to the CESM visualCaseGen folder
	- name: Copy VCG checkout into the correct folder
	run: \|
	cp -r VCGTEMP/* CESM/visualCaseGen/

	# set up conda
	- uses: conda-incubator/setup-miniconda@v3

	# visualCaseGen conda env
	- name: Create visualCaseGen conda env
	run: \|
	cd CESM/visualCaseGen/
	conda env create --file environment.yml
	conda activate visualCaseGen

	# Run all tests
	- name: Run tests
	env:
	CIME_MODEL: "cesm"
	CIME_DRIVER: "nuopc"
	CIME_TEST_PLATFORM: ubuntu-latest
	run: \|
	export SRC_PATH="${GITHUB_WORKSPACE}"
	mkdir -p /home/runner/cesm/scratch
	cd CESM/visualCaseGen/
	conda activate visualCaseGen
	pytest tests

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