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v2.1.0 — Covariate-adjusted model + workflow diagram

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@Ekin-Kahraman Ekin-Kahraman released this 05 Apr 14:40
· 15 commits to main since this release

Changes since v2.0.0

  • Primary DE model adjusted for sex covariate (~ condition + gender). Addresses the main biological weakness: unadjusted model despite having sex metadata. Results regenerated: 1,773 DE genes (was 1,902), 99.8% sign concordance with full cohort.
  • Workflow diagram added to README (ASCII pipeline visualization).
  • NA gender filtering added before balanced sampling and full-cohort analysis.
  • All figures, tables, and tests regenerated with the covariate-adjusted model. CI passes including full pipeline rebuild.