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@EngreitzLab

Engreitz Lab

Engreitz Lab @ Stanford University

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  1. ABC-GWAS-Paper ABC-GWAS-Paper Public

    Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021

    PostScript 15 2

  2. CRISPRDesigner CRISPRDesigner Public

    Design and selection of gRNAs for pooled CRISPRi tiling screens

    Python 2

Repositories

Showing 10 of 24 repositories
  • CRISPR_comparison Public

    Snakemake workflow for comparing E-G links to experimental data

    EngreitzLab/CRISPR_comparison’s past year of commit activity
    HTML 18 2 0 1 Updated May 5, 2025
  • scE2G Public

    Pipeline to run scE2G

    EngreitzLab/scE2G’s past year of commit activity
    Python 24 MIT 3 2 0 Updated Apr 25, 2025
  • eQTLEnrichment Public
    EngreitzLab/eQTLEnrichment’s past year of commit activity
    R 3 1 0 0 Updated Apr 18, 2025
  • cNMF_pipeline Public
    EngreitzLab/cNMF_pipeline’s past year of commit activity
    Jupyter Notebook 5 0 1 1 Updated Apr 15, 2025
  • ENCODE_rE2G Public

    Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model

    EngreitzLab/ENCODE_rE2G’s past year of commit activity
    Python 7 1 1 1 Updated Apr 11, 2025
  • ABC-Enhancer-Gene-Prediction-20250314-archive Public archive

    Backup of https://github.com/broadinstitute/ABC-Enhancer-Gene-Prediction with full commit history. Please visit that repository for the most recent pipeline.

    EngreitzLab/ABC-Enhancer-Gene-Prediction-20250314-archive’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 15, 2025
  • IGVF_E2G_jamboree_2024 Public

    Helper scripts for IGVF E2G pillar project jamboree 2024

    EngreitzLab/IGVF_E2G_jamboree_2024’s past year of commit activity
    R 0 2 0 0 Updated Mar 12, 2025
  • GWAS_E2G_benchmarking Public

    Benchmark enhancer-gene predictions against fine-mapped GWAS variants

    EngreitzLab/GWAS_E2G_benchmarking’s past year of commit activity
    R 2 0 2 0 Updated Feb 15, 2025
  • DC_TAP_paper Public
    EngreitzLab/DC_TAP_paper’s past year of commit activity
    R 0 0 0 0 Updated Jan 23, 2025
  • gene_network_evaluation Public

    Evaluation framework for computationally inferred gene networks from single-cell data.

    EngreitzLab/gene_network_evaluation’s past year of commit activity
    Jupyter Notebook 12 GPL-2.0 7 17 0 Updated Jan 11, 2025
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