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Have th pipeline dump a config.yaml in the output directory that I can use for the dashboard. Here is an example:
output_loc: /cellar/users/aklie/opt/gene_program_evaluation/dashapp/example_data/iPSC_EC_evaluations/cNMF_60_0.2_gene_names.h5mu
categorical_keys: ['sample']
continuous_keys: None
dim_reduce_keys: None
workdir: /cellar/users/aklie/opt/gene_program_evaluation/dashapp/example_data/iPSC_EC_evaluations
data_key: rna
annotations_loc: "annotations.csv" # if none defaults to annotations.csvUser can manually add a location for annotations to be dumped as above. Otherwise it defaults to eval directory.
This is important for things like:
- Knowing what categorical keys to plot
- Knowing what the inference key (data_key) was