Skip to content

microbes valid_structures additions #480

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
manuelcarbajo wants to merge 1 commit into
base: main
Choose a base branch
from
Open

microbes valid_structures additions #480

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 7 additions & 0 deletions config/gff_metaparser/valid_structures.conf
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -130,6 +130,13 @@ cds SUB:mgnify_prodig:UNSEEN +gene:biotype=protein_coding/+mRNA:biotype=protein_

@RNA_EXON_ONLY SUB:mgnify_prodig:UNSEEN +gene:biotype=@RNA_EXON_ONLY/@RNA_EXON_ONLY/+exon

# FungiDB models
protein_coding_gene/mRNA/exon SUB gene/mRNA/exon
protein_coding_gene/mRNA/CDS SUB gene/mRNA/CDS
protein_coding_gene/mRNA/three_prime_UTR IGNORE
protein_coding_gene/mRNA/five_prime_UTR IGNORE
protein_coding_gene/transcript/exon SUB gene/mRNA/exon
protein_coding_gene/transcript/CDS SUB gene/mRNA/CDS

## IGNORED MODELS / PARTS
gene/dna_motif IGNORE
Expand Down