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Add missing csq term in vcf_to_bed #25

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Add missing csq term in vcf_to_bed #25

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Binary file modified nextflow/vcf_prepper/bin/vcf_to_bed
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3 changes: 2 additions & 1 deletion nextflow/vcf_prepper/src/rust/ensembl/vcf_to_bed/src/main.rs
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Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ use std::{io::{BufReader,Write}, fs::File, env, collections::HashMap, collection
use vcf::{VCFError, VCFReader};
use flate2::read::MultiGzDecoder;

const VARIANTGROUP : [(&str, u8); 45] = [
const VARIANTGROUP : [(&str, u8); 46] = [
("frameshift_variant", 1),
("inframe_deletion", 1),
("inframe_insertion", 1),
Expand All @@ -41,6 +41,7 @@ const VARIANTGROUP : [(&str, u8); 45] = [
("mature_miRNA_variant", 3),
("NMD_transcript_variant", 3),
("non_coding_transcript_exon_variant", 3),
("coding_transcript_variant", 3),
("non_coding_transcript_variant", 3),
("start_retained_variant", 3),
("stop_retained_variant", 3),
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