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Pull requests: Ensembl/ensembl-variation

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Pull requests list

Annotation generation bug fixes SpliceAI pipeline
#1215 opened May 15, 2026 by ainefairbrother Contributor Loading…
4
Fix stop_retained incorrectly called for stop_gained/stop_lost (Issue ensembl-vep#1710)
#1202 opened Jan 29, 2026 by palakpsheth Loading…
6 tasks done
1
@likhitha-surapaneni
2
Add 'only run new IDs' behaviour MaveDB pipeline
#1200 opened Jan 12, 2026 by ainefairbrother Contributor Loading…
Add improved liftover pipeline (using bcftools +liftover) on hold
#1165 opened May 29, 2025 by ainefairbrother Contributor Loading…
Nextflow ProteinFunction: support for SQLite db ProteinFunction pipeline
#1152 opened Feb 11, 2025 by nakib103 Contributor Loading…
@likhitha-surapaneni
2
Web VEP: fix incorrect variant end on hold
#1059 opened Nov 30, 2023 by nuno-agostinho Contributor • Draft
@nakib103
5
Return subseq from correct side of seq when on reverse strand using a… on hold
#454 opened Sep 13, 2019 by aparton Contributor Loading…
@nakib103
1
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