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  • Please consider which branch this is to be submitted against. This is usually obvious, however if it is to be applied to both a release branch nn and master then please submit it against postreleasefix/nn and let us merge it into to the two branches.

Description

This PR would update the code to generate Pan Compara URLs, matching the base URL of an Ensembl sister site to be consistent with the current site (e.g. links to Vertebrates from staging-plants.ensembl.org would point to staging.ensembl.org).

Views affected

This would affect any Pan Compara view with links to Ensembl sister sites.

In the following examples, clicking on links for Ensembl sites other than Plants leads to a staging site from a sandbox page, and to a live site from a staging-site page:

  • Pan Compara gene tree of A. thaliana gene AT1G07820 : sandbox vs staging
  • Pan Compara orthologues for A. thaliana gene AT1G07820 : sandbox vs staging

Possible complications

No complications expected, as the default behaviour is to point to the relevant Ensembl live site, as is done currently.

Merge conflicts

None detected.

Related JIRA Issues (EBI developers only)

  • N/A

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