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Update ODK container version in QC workflow #1647

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Merged
matentzn merged 5 commits into from
Oct 20, 2025
Merged

Update ODK container version in QC workflow #1647

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f0e8a82
Update ODK container version in QC workflow
matentzn Oct 20, 2025
9055071
Update Foodon import
matentzn Oct 20, 2025
a97f12d
Update ODK container version in workflow
matentzn Oct 20, 2025
4de6b9e
Add /tmp directory to .gitignore
matentzn Oct 20, 2025
055f776
Comment out SSSOM installation step in workflow
matentzn Oct 20, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/qc.yml
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Expand Up @@ -19,7 +19,7 @@ jobs:
ontology_qc:
# The type of runner that the job will run on
runs-on: ubuntu-latest
container: obolibrary/odkfull:v1.2.29
container: obolibrary/odkfull:v1.6

# Steps represent a sequence of tasks that will be executed as part of the job
steps:
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10 changes: 5 additions & 5 deletions .github/workflows/sssom-qc.yml
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Expand Up @@ -17,12 +17,12 @@ on:
jobs:
sssom_validation:
runs-on: ubuntu-latest
container: obolibrary/odkfull:v1.4
container: obolibrary/odkfull:v1.6
steps:
- name: Install latest SSSOM
env:
DEFAULT_BRANCH: master
run: pip install --upgrade pip && pip install -U sssom
#- name: Install latest SSSOM
# env:
# DEFAULT_BRANCH: master
# run: pip install --upgrade pip && pip install -U sssom
- uses: actions/checkout@v2
- name: Run Mapping QC checks
env:
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -31,3 +31,4 @@ src/envo/uberon.obo.1
src/envo/tmp

venv/
/tmp
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