Data

• covid_data_utah.csv: COVID-19 case and variant data for Utah. Source: https://ibis.utah.gov/ibisph-view/query/result/covid/COVID19/Count.html

• COVID-19 variants: COVID-19 variants as observed from phylogenetic trees. This file uses data from https://nextstrain.org

References

• Hadfield et al, Nextstrain: real-time tracking of pathogen evolution, Bioinformatics (2018)
• Sagulenko et al, TreeTime: Maximum-likelihood phylodynamic analysis, Virus Evolution (2017)