NOTICE: this project is deprecated. For mothur tools, please see the Galaxy IUC tool repository: https://github.com/galaxyproject/tools-iuc/tree/main/tools/mothur The tools are also installed on usegalaxy.eu
All information pertaining to the Galaxy mothur Toolset (GmT) project
This work has been published here (submission in progress)
To run the docker image
docker run -d -p 80:8080 quay.io/shiltemann/galaxy-mothur-toolset
open a browser (firefox/chrome/safari, not IE) and navigate to localhost:8080. Log into Galaxy using the following credentials: admin@galaxyproject.org:admin. The workflow has been imported into this account, and all test data has been uploaded to a shared data library.
To build the docker image from scratch, clone this repository, and run the following command from its root directory:
docker build -f docker/Dockerfile .
There is a training module on how to perform the Mothur MiSeq SOP in Galaxy available from the Galaxy Training Network (GTN) site here