Code for plotting the figures in the marine time-series manuscript.
The folder "Data_files" contains the ASV sequence tables, taxonomy and metadata from:
- the FRAM observatory at the LTER (long-term ecological research) site HAUSGARTEN at the F4 (78.9995 N, 7.0000 W) and the HG-IV moorings (79.0230 N, 4.2618 W) collected between 2016 - 2017
- the English Channel coastal L4 site (50.2500 N, 4.2167 W) collected between 2003 - 2008
- the Compass Buoy Station HL0 in the Bedford Basin, Canada (44.6936 N, 63.6403 W) collected between 2014 - 2017
Note: The data for the Australian National Reference Sites are too big to upload, but.. ASV tables and metadata from the Australian sites can be downloaded through the Bioplatforms portal (https://data.bioplatforms.com/bpa/otu/), following the steps outlined below. (1) Select Amplicon = 27f519r_bacteria (2) Select Environment = Marine (3) Select Sample Site = Maria Island or Yongala or Rottnest Island (4) Export Search results, these include ASV tables, taxonomy and Metadata
The folder also contains R scripts to plot the figures.