✨ Introduce `mri_robust_template` as option for longitudinal template generation - #2165

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shnizzedy wants to merge 50 commits into

prep_for/mri_robust_templatefrom

mri_robust_template

Commits on Nov 13, 2024

:truck: Split longitudinal into anat and func \& :rotating_light: Lint anat
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37fc070
:wrench: Update config to allow choosing `mri_robust_template` for longitudinal (new default)
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9d09358
:necktie: Use `max_iter` parameter for longitudinal template generation.
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dc4c2df

Commits on Nov 14, 2024

:twisted_rightwards_arrows: Merge branch 'mri_robust_template' into fix/longitudinal-configuration-subject_id
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ae5be2c

Commits on Nov 15, 2024

:twisted_rightwards_arrows: Merge changes from #2160
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:bug: Debug changes for longitudinal pipeline
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c11c88f

Commits on Nov 20, 2024

:construction: WIP :sparkles: Drop in `mri_robust_template`
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af27165
:recycle: SSOT `check_creds_path`
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a5d2c60

Commits on Nov 21, 2024

:necktie: Make cross-graph and cross-pool connections
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1a90cc0
:necktie: Convert xfms from `lta` to `mat`
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322d660

Commits on Nov 23, 2024

:necktie: Clarify longitudinal `xfm`s vs longitudinal `warp`s
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342dae2

Commits on Nov 25, 2024

:recycle: Differentiate longitudinal template images from session images in longitudinal template space
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7ce9361

Commits on Dec 4, 2024

:construction: :necktie: Enable subworkflow cross-graph connections
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6ad7d55

Commits on Dec 6, 2024

:necktie: Finalize longitudinal (FSL) connections
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5b527a5
:fire: Remove duplicate output rows
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:necktie: Output longitudinal template images
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6339798

Commits on Feb 3, 2025

:recycle: :art: SSOT `orientation_node`
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1604b4f
:necktie: Reorient `mri_robust_template` outputs
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1eacbe9

Commits on Feb 5, 2025

:art: Combine `get_cpac_provenance` + `check_prov_for_regtool` → `reg_tool`
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e7276e7

Commits on Feb 6, 2025

:recycle: Refactor `ANTs_registration_connector` to make DRYer
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1a48bf3

Commits on Feb 7, 2025

:recycle: Connect ANTs methods for longitudinal registration
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78b2aa1

Commits on Feb 8, 2025

:truck: Move `transform_derivative` into `registration.utils`
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087f1e3

Commits on Feb 10, 2025

:necktie: Rewire ANTs registration + `mri_robust_template`
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6162f2b

Commits on Feb 13, 2025

:necktie: Update ANTs symmetric registration for longitudinal preprocessing
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62451d2

Commits on Feb 14, 2025

:truck: Longutudinal ↔ symtemplate to subject-level anat directory
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870f43d

Commits on Feb 24, 2025

Commits on Mar 26, 2025

Commits on Apr 8, 2025

:necktie: Create expected outputs log in longitudinal template flow
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610c191
:truck: Give logitudinal its own log
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8dddb7a

Commits on Apr 9, 2025

Commits on Apr 10, 2025

:bug: Fix `Configuration.__contains__`
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c8410cc

Commits on Apr 11, 2025

:recycle: Move nested methods to a Mixin
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7495dc5
:bug: Ensure log dir exists when initializing logger
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b46fc43

Commits on Apr 12, 2025

:bug: Reseparate longitudinal `expectedOutputs` from sessions specific
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4981141

Commits on Apr 14, 2025

:art: Clean up Configuration syntax
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ae04b8d

Commits on Apr 16, 2025

:white_check_mark: Update exception expectation for pytest
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aff2971

Commits on Jul 14, 2025

:pencil2: Correct method call name
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e175b6e

Commits on Jul 18, 2025

adding to changelog

birajstha
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a3648ea
adding a unit-test for ideal_bandpass

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f29fb35
pre-commit run

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d8e0f0a
Update CPAC/nuisance/tests/test_bandpass.py

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ac22805
[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot]
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bed558a
fixing the tests

birajstha
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46bc62a
check none before other

birajstha
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63f44d0

Commits on Jul 21, 2025

:white_check_mark: Adjust test parameters
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4fd5998