pl-bestsurfreg-surface-resample is a ChRIS
ds plugin which does surface registration using MNI/CIVET tools.
The inputs are MNI .obj surfaces of either the left or right brain hemisphere.
For each surface, the registered vertex-wise data is produced as a .txt file,
as well as the intermediate .sm registration map file.
In its default configuration, it uses the average 29 gestational age fetal brain template of the Im Lab to register a mask of the medial cut.
Figure: (Left) mask does not cover medial cut. (Right) mask is registered to cover the medial cut.
pl-bestsurfreg-surface-resample is a ChRIS plugin, meaning it can
run from either within ChRIS or the command-line.
To get started with local command-line usage, use Apptainer
(a.k.a. Singularity) to run pl-bestsurfreg-surface-resample as a container:
apptainer exec docker://fnndsc/pl-bestsurfreg-surface-resample bsrr [--args values...] input/ output/To print its available options, run:
apptainer exec docker://fnndsc/pl-bestsurfreg-surface-resample bsrr --help