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Never underestimate the monkey
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Never underestimate the monkey

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Fabbiologia/README.md

🌊 Fabio Favoretto, PhD

Marine Numerical Ecologist · Data Scientist · Conservation Biologist

Ocean GIF

Blending cutting-edge data science with marine ecology to drive real conservation outcomes.

Google Scholar ORCID Plymouth LinkedIn


👤 About Me

I am a numerical ecologist with extensive expertise in marine conservation and data science. My work sits at the intersection of reef ecology, spatial fisheries analysis, AI-powered tools, and the socioeconomic dimensions of marine conservation — from the Gulf of California to the Mediterranean and beyond.

  • 🎓 Lecturer in Marine Biology & Scientific Diving — University of Plymouth, UK (2026–present)
  • 🔬 Chief Scientist — Centro para la Biodiversidad Marina y la Conservación A.C., Mexico (2020–present)
  • 🌊 Postdoctoral Researcher — Scripps Institution of Oceanography, UC San Diego (2023–2025)

🔬 Research Interests

  • Marine Protected Area design, monitoring, and effectiveness
  • Reef ecology: trophic structure, tropicalization, and resilience
  • Spatial fisheries analysis using AIS/VMS vessel tracking
  • Socioeconomic dimensions of ecotourism and small-scale fisheries
  • AI and large language models applied to marine conservation
  • Remote sensing and satellite-derived bathymetry

🛠️ Skills

Coding GIF

Languages & Tools
R Python SQL Git GIS

Data Science
Machine Learning Deep Learning Spatial Modelling Time Series Knowledge Graphs Data Visualization AI Video Processing Large Language Models

Fieldwork
PADI Divemaster · 4,000+ dives · International Scientific Diver


🚀 Featured Projects

Global assessment of the economic and conservation value of the scuba diving industry. Integrates ecological, economic, and governance data across multiple ocean basins. Published in Cell Reports Sustainability (2025).

Interactive decision-support platform for ecological monitoring of the largest fully protected marine area in North America. Built with Shiny, geospatial data, and remote sensing.

🤖 ChatMPA

AI-powered marine protection assistant prototype. Designed to support MPA managers and stakeholders with accessible, data-driven conservation intelligence.

🐟 dafishr

R package for downloading, wrangling, and analysing Vessel Monitoring System (VMS) data. Used for spatial fisheries management and IUU fishing detection.

R package for processing and calibrating GLS (light-level geolocation) tracking data from seabirds.


📊 Selected Publications

Data GIF

Year Title Journal
2026 🆕 Operationalizing nature recovery to market outcomes Ecological Economics
2025 Navigator – global database of verified MPA regulations & boundaries Scientific Data
2025 Marine protected areas for dive tourism Scientific Reports
2025 Global economic impact of scuba dive tourism Cell Reports Sustainability
2025 Marine Prosperity Areas: aligning restoration and human well-being Frontiers in Marine Science
2024 A scalable reef status index for assessing fish trophic structure Ecological Indicators
2024 Beyond COVID-19: ecotourism's role in ocean conservation targets Frontiers in Ecology & the Environment
2024 Mangrove preservation could have reduced damages from Hurricane Otis Science of the Total Environment
2023 The largest fully protected MPA in North America does not harm industrial fishing Science Advances
2022 Warming and marine heatwaves tropicalize rocky reef communities Progress in Oceanography
2022 Discovering marine biodiversity in the 21st century Advances in Marine Biology

📚 Full list on Google Scholar


🌍 Media Coverage

Research featured in:

Media Media Media Media Media


🤿 In the Field

Diving GIF

4,000+ dives across the Gulf of California, Pacific Mexico, and beyond


🤝 Let's Collaborate

I'm always open to collaborations combining data science, AI, and marine ecology for conservation impact.
Feel free to reach out or explore my repositories!

https://media.giphy.com/media/l4pTfqyI6TCjUW4Vo/giphy.gif

Pinned Loading

  1. CBMC-GCMP/dafishr CBMC-GCMP/dafishr Public

    Download, Wrangle, and Analyse VMS data

    R 7 1

  2. Marine_Habitat_protection Marine_Habitat_protection Public

    R

  3. CBMC-GCMP/AtlasAquatica CBMC-GCMP/AtlasAquatica Public

    The Atlas Aquatica project is an international effort to estimate the global value of the scuba diving industry

    R

  4. CBMC-GCMP/matrixr CBMC-GCMP/matrixr Public

    Repository for the Mangrove Threath Index package matrixr

    R 4

  5. CBMC-GCMP/mpas_do_not_harm_fishery CBMC-GCMP/mpas_do_not_harm_fishery Public

    Supplementary material for a manuscript subitted to a peer reviewed journal. The manuscript describes an analysis of VMS fishery data to assess that fully protected marine areas do not harm industr…

    R

  6. CBMC-GCMP/sniim-webscraper CBMC-GCMP/sniim-webscraper Public

    R code to webscrape the page from the SNIIM website, obtain fish prices and generate a dashboard.

    R