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fix: CLIN-5494 Update OMIM phenotype regex to parse phenotype without omimId #283

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Merged
emmanuelnau merged 1 commit into from
Jan 6, 2026
Merged

fix: CLIN-5494 Update OMIM phenotype regex to parse phenotype without omimId #283

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2 changes: 1 addition & 1 deletion ...rc/main/scala/bio/ferlab/datalake/spark3/publictables/normalized/omim/OmimPhenotype.scala
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ case class OmimPhenotype(name: String,

object OmimPhenotype {

val pheno_regexp: Regex = "(.*),\\s(\\d*)\\s\\([1234]\\)(?:,\\s(.*))?".r
val pheno_regexp: Regex = "(.*)(?:,\\s(\\d*))?\\s\\([1234]\\)(?:,\\s(.*))?".r

def mapInheritance(inheritance: String): Option[Seq[String]] = {
if (inheritance == null) None
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