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build(deps): bump the npm_and_yarn group across 2 directories with 8 updates - #28

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Bumps the npm_and_yarn group with 2 updates in the /skills/biomcp-server/repo directory: hono and undici.
Bumps the npm_and_yarn group with 6 updates in the /skills/nature-paper-to-patent/scripts/disclosure directory:

Package From To
ws 8.20.0 8.21.1
basic-ftp 5.2.0 5.3.1
dompurify 3.3.3 3.4.12
ip-address 10.1.0 10.2.0
mermaid 11.14.0 11.16.0
postcss 8.5.8 8.5.19

Updates hono from 4.12.21 to 4.12.25

Release notes

Sourced from hono's releases.

v4.12.25

Security fixes

This release includes fixes for the following security issues:

CORS Middleware reflects any Origin with credentials when origin defaults to the wildcard

Affects: hono/cors. Fixes the wildcard origin reflecting the request Origin and sending Access-Control-Allow-Credentials: true when credentials: true is set without an explicit origin, where any site a logged-in user visited could make credentialed cross-origin requests and read responses from cookie-authenticated endpoints. GHSA-88fw-hqm2-52qc

Body Limit Middleware can be bypassed on AWS Lambda by understating Content-Length

Affects: hono/body-limit on AWS Lambda (hono/aws-lambda, hono/lambda-edge). Fixes the request being built with the client-declared Content-Length while the body is delivered fully buffered, where a client could declare a small Content-Length with a much larger body and slip past the configured size limit. GHSA-rv63-4mwf-qqc2

Path traversal in serve-static on Windows via encoded backslash (%5C)

Affects: serveStatic on Windows (Node, Bun, Deno adapters). Fixes the path guard allowing a lone backslash, where an encoded backslash (%5C) decoded to \ was treated as a separator by the Windows path resolver, letting a single URL segment escape into a middleware-guarded subtree. GHSA-wwfh-h76j-fc44

AWS Lambda adapter merges multiple Set-Cookie headers into one value, dropping cookies on ALB single-header and Lattice

Affects: hono/aws-lambda. Fixes multiple Set-Cookie response headers being joined into one comma-separated value for ALB single-header responses and VPC Lattice v2, where the value could not be split back into individual cookies and clients silently dropped or misparsed them. GHSA-j6c9-x7qj-28xf

Lambda@Edge adapter keeps only the last value of a repeated request header, dropping the rest

Affects: hono/lambda-edge. Fixes repeated request headers being written with overwrite instead of append, where only the last value of a header such as X-Forwarded-For reached the application and the remaining values were silently dropped. GHSA-wgpf-jwqj-8h8p

v4.12.24

What's Changed

Full Changelog: honojs/hono@v4.12.23...v4.12.24

v4.12.23

What's Changed

Full Changelog: honojs/hono@v4.12.22...v4.12.23

v4.12.22

What's Changed

... (truncated)

Commits

Updates undici from 5.29.0 to 7.28.0

Release notes

Sourced from undici's releases.

v7.28.0

⚠️ Security Release

This release line addresses 7 security advisories, all shipped in v7.28.0.

Action required: Upgrade to undici 7.28.0 or later.

npm install undici@^7.28.0

The v7 line is not affected by GHSA-38rv-x7px-6hhq (CVE-2026-9675), which is an 8.x-only regression.

Note on GHSA-hm92-r4w5-c3mj: this fix shipped in v7.28.0, not the earlier 7.2x line — the vulnerable single-pool code was still present through v7.27.2. The per-origin pool fix is 3805b8f8 (#5041).

Summary

Advisory CVE Severity (CVSS) Fixed in Fix commit
GHSA-vxpw-j846-p89q CVE-2026-12151 High (7.5) 7.28.0 8cb10f98
GHSA-vmh5-mc38-953g CVE-2026-9697 High (7.4) 7.28.0 04201f89
GHSA-hm92-r4w5-c3mj CVE-2026-6734 High (7.5) 7.28.0 3805b8f8
GHSA-pr7r-676h-xcf6 CVE-2026-9678 Moderate (5.9) 7.28.0 85a24055
GHSA-p88m-4jfj-68fv CVE-2026-9679 Moderate (5.9) 7.28.0 d0574cc4
GHSA-g8m3-5g58-fq7m CVE-2026-11525 Low (3.7) 7.28.0 d0574cc4
GHSA-35p6-xmwp-9g52 CVE-2026-6733 Low (3.7) 7.28.0 ea8930cf

High severity

WebSocket DoS via fragment count bypass — CVE-2026-12151

GHSA-vxpw-j846-p89q · CWE-400, CWE-770 Fix: 8cb10f98 websocket: limit the number of fragments in a message (part of backport a027a4a0 Backport WebSocket maxPayloadSize fixes to v7.x, #5423)

A malicious WebSocket server can stream a large number of small or empty continuation frames. Undici enforced a limit on cumulative payload size but did not limit the number of fragments per message, leading to unbounded memory growth and denial of service.

  • Affected: applications using new WebSocket(...) or WebSocketStream against untrusted endpoints.
  • Workaround: none — upgrade is required.

TLS certificate validation bypass in SOCKS5 ProxyAgent — CVE-2026-9697

GHSA-vmh5-mc38-953g · CWE-295

... (truncated)

Commits
  • f9eba0a Bumped v7.28.0 (#5430)
  • a027a4a Backport WebSocket maxPayloadSize fixes to v7.x (#5423)
  • 8cb10f9 websocket: limit the number of fragments in a message
  • 04201f8 fix: honor requestTls when proxy is SOCKS5
  • fcd642f fix(socks5): preserve dispatch backpressure return value (#5166)
  • bc98c97 fix(socks5): use configured connector in Socks5ProxyAgent (#5168)
  • 9e1c743 fix(socks5): encode embedded IPv4 tails in IPv6 literals correctly (#5099)
  • 376c8be fix(socks5): enforce authenticated state before CONNECT (#5097)
  • 3805b8f fix(socks5-proxy-agent): use per-origin pools to prevent cross-origin routing...
  • 85a2405 fix(cache): trim qualified field names
  • Additional commits viewable in compare view
Maintainer changes

This version was pushed to npm by GitHub Actions, a new releaser for undici since your current version.

Install script changes

This version modifies prepare script that runs during installation. Review the package contents before updating.


Updates ws from 8.18.0 to 8.21.0

Release notes

Sourced from ws's releases.

8.21.1

Bug fixes

  • Empty fragments are now counted toward the limit (a2f4e7c0).
  • The default values of the maxBufferedChunks and maxFragments options have been reduced (f197ac65).

8.21.0

Features

  • Introduced the maxBufferedChunks and maxFragments options (2b2abd45).

Bug fixes

  • Fixed a remote memory exhaustion DoS vulnerability (2b2abd45).

A high volume of tiny fragments and data chunks could be sent by a peer, using modest network traffic, to crash a ws server or client due to OOM.

import { WebSocket, WebSocketServer } from 'ws';
const wss = new WebSocketServer({ port: 0 }, function () {
const data = Buffer.alloc(1);
const options = { fin: false };
const { port } = wss.address();
const ws = new WebSocket(ws://localhost:${port});
ws.on('open', function () {
(function send() {
ws.send(data, options, function (err) {
if (err) return;
send();
});
})();
});
ws.on('error', console.error);
ws.on('close', function (code, reason) {
console.log(client close - code: ${code} reason: ${reason.toString()});
});
});
wss.on('connection', function (ws) {
ws.on('error', console.error);
ws.on('close', function (code, reason) {
console.log(server close - code: ${code} reason: ${reason.toString()});
});
});

... (truncated)

Commits
  • ae1de54 [dist] 8.21.1
  • 8e9511b [ci] Trust Coveralls Homebrew tap
  • f197ac6 [fix] Lower default values of maxBufferedChunks and maxFragments
  • 8df8265 [ci] Update actions/checkout action to v7
  • a2f4e7c [fix] Count empty fragments toward the limit (#2329)
  • e79f912 [pkg] Approve install scripts for bufferutil and utf-8-validate
  • 4ea355d [doc] Document 32-bit signed integer coercion for option values
  • 2120f4c [example] Remove uuid dependency
  • 4c534a6 [security] Add latest vulnerability to SECURITY.md
  • bca91ad [dist] 8.21.0
  • Additional commits viewable in compare view

Updates ws from 8.20.0 to 8.21.1

Release notes

Sourced from ws's releases.

8.21.1

Bug fixes

  • Empty fragments are now counted toward the limit (a2f4e7c0).
  • The default values of the maxBufferedChunks and maxFragments options have been reduced (f197ac65).

8.21.0

Features

  • Introduced the maxBufferedChunks and maxFragments options (2b2abd45).

Bug fixes

  • Fixed a remote memory exhaustion DoS vulnerability (2b2abd45).

A high volume of tiny fragments and data chunks could be sent by a peer, using modest network traffic, to crash a ws server or client due to OOM.

import { WebSocket, WebSocketServer } from 'ws';
const wss = new WebSocketServer({ port: 0 }, function () {
const data = Buffer.alloc(1);
const options = { fin: false };
const { port } = wss.address();
const ws = new WebSocket(ws://localhost:${port});
ws.on('open', function () {
(function send() {
ws.send(data, options, function (err) {
if (err) return;
send();
});
})();
});
ws.on('error', console.error);
ws.on('close', function (code, reason) {
console.log(client close - code: ${code} reason: ${reason.toString()});
});
});
wss.on('connection', function (ws) {
ws.on('error', console.error);
ws.on('close', function (code, reason) {
console.log(server close - code: ${code} reason: ${reason.toString()});
});
});

... (truncated)

Commits
  • ae1de54 [dist] 8.21.1
  • 8e9511b [ci] Trust Coveralls Homebrew tap
  • f197ac6 [fix] Lower default values of maxBufferedChunks and maxFragments
  • 8df8265 [ci] Update actions/checkout action to v7
  • a2f4e7c [fix] Count empty fragments toward the limit (#2329)
  • e79f912 [pkg] Approve install scripts for bufferutil and utf-8-validate
  • 4ea355d [doc] Document 32-bit signed integer coercion for option values
  • 2120f4c [example] Remove uuid dependency
  • 4c534a6 [security] Add latest vulnerability to SECURITY.md
  • bca91ad [dist] 8.21.0
  • Additional commits viewable in compare view

Updates basic-ftp from 5.2.0 to 5.3.1

Release notes

Sourced from basic-ftp's releases.

5.3.1

5.3.0

  • Changed: Introduced an upper bound for total bytes of directory listing, fixes GHSA-rp42-5vxx-qpwr.
  • Added: Option to increase the upper bound for total bytes of directory listing in Client constructor.

5.2.2

5.2.1

Changelog

Sourced from basic-ftp's changelog.

5.3.1

5.3.0

  • Changed: Introduced an upper bound for total bytes of directory listing, fixes GHSA-rp42-5vxx-qpwr.
  • Added: Option to increase the upper bound for total bytes of directory listing in Client constructor.

5.2.2

5.2.1

Commits
Maintainer changes

This version was pushed to npm by patrickjuchli, a new releaser for basic-ftp since your current version.

Install script changes

This version adds prepare script that runs during installation. Review the package contents before updating.


Updates dompurify from 3.3.3 to 3.4.12

Release notes

Sourced from dompurify's releases.

DOMPurify 3.4.12

  • Fixed an issue where a hook would not get called for custom elements, thanks @​Rikuxx0
  • Hardened the handling of hooks removing elements, @​mkrause-bee360
  • Added support for a few new SVG attributes, thanks @​cbn-falias & @​Develop-KIM
  • Hardened the handling of declarative partial updates
  • Updated the documentation is several spots, README, wiki, etc.
  • Bumped several dependencies where possible

DOMPurify 3.4.11

  • Fixed an issue with a leaky config for hooks via setConfig, thanks @​trace37labs
  • Bumped vulnerable development dependencies to arrive at plain 0 with npm audit
  • Updated the osv-scanner suppression list as no vulnerable dependencies are left for now
  • Updated up the linting tool-chain and removed now-redundant lint directives
  • Updated the documentation is several spots, README, wiki, etc.
  • Bumped several dependencies where possible

DOMPurify 3.4.10

  • Refactored codebase for clarity: extracted the public type declarations into types.ts
  • Decomposed the three largest sanitizer functions into focused helpers
  • Removed duplicated defaults and dead branches, consolidated SAFE_FOR_TEMPLATES scrubbing into single shared path
  • Improved per-node performance by hoisting the mXSS probe regexes and testing textContent before innerHTML
  • Added a deterministic micro-benchmark harness (npm run bench) with a --compare mode
  • Reduced CI cost by running the full three-engine browser suite once per PR
  • Refreshed the demos/ folder so every demo runs again, and added a SVG-via-<img> demo
  • Documented the bench and test:happydom scripts in the README
  • Completed the Attack Classes & Bypass History wiki page
  • Bumped several dependencies where possible

DOMPurify 3.4.9

  • Further improved the handling of Trusted Types config options, thanks @​offset
  • Further improved the handling of IN_PLACE sanitization, thanks @​mozfreddyb
  • Added more test coverage for IN_PLACE and Trusted Types related usage
  • Bumped several dependencies where possible
  • Updated README and wiki with more accurate documentation & attack samples

DOMPurify 3.4.8

  • Cleaned up the repository root, renamed some and removed unneeded files
  • Fixed an issue with handling of Trusted Types policies, thanks @​fulstadev
  • Fixed the node iterator for better template scrubbing, thanks @​IamLeandrooooo
  • Included formerly missing LICENSE-MPL in published npm package, thanks @​asamuzaK
  • Bumped several dependencies where possible

DOMPurify 3.4.7

  • Hardened the handling of Shadow Roots when using IN_PLACE, thanks @​GameZoneHacker
  • Removed a problem leading to permanent hook pollution, thanks @​offset
  • Refactored the test suite and expanded test coverage significantly

DOMPurify 3.4.6

... (truncated)

Commits
Install script changes

This version adds prepare script that runs during installation. Review the package contents before updating.


Updates ip-address from 10.1.0 to 10.2.0

Commits
  • 80fccaa 10.2.0
  • abaeb4d Type Address4.addressMinusSuffix as non-nilable (closes #143)
  • 2878c29 Preserve subnet prefix through Address6.to4() (closes #123) (#203)
  • 586666e Reject trailing junk in Address6.fromURL (closes #158) (#202)
  • 80bc76e Validate static factories instead of silently overflowing (#201)
  • 98927be Clarify isValid() accepts CIDRs with host bits set (#81)
  • a0eb073 Fix getScope() and broaden getType() classification (closes #122) (#200)
  • ec52105 Add networkForm() for CIDR network-address strings (#199)
  • a9443a7 Add isMapped4() predicate for IPv4-mapped IPv6 addresses (closes #62) (#198)
  • f01d742 Add address-property predicates (private, ULA, loopback, link-local, etc.) (#...
  • Additional commits viewable in compare view

Updates mermaid from 11.14.0 to 11.16.0

Release notes

Sourced from mermaid's releases.

mermaid@11.16.0

Minor Changes

  • #7535 ea1c48f Thanks @​ragelink! - feat(cynefin): Adds the Cynefin framework as a new diagram type (beta) to Mermaid (available as cynefin-beta). The Cynefin framework, created by Dave Snowden, is a decision-making framework that categorizes problems into five complexity domains, widely used in agile, incident management, strategy, and organizational design.

  • #7721 f45cc2c Thanks @​notionparallax! - feat(treeView): add box-drawing character input support for treeView diagrams

  • #7550 f1f4d45 Thanks @​DominicBurkart! - feat(xychart): add per-point text labels for xychart line plots

  • #7527 b4d0442 Thanks @​notionparallax! - feat(treeView): Extends the existing treeView-beta diagram with features useful for representing file/directory structures.

  • #7793 a6f097d Thanks @​SSDWGG! - feat(er): support optional ER attribute types with a ? suffix

  • #7772 37f2e36 Thanks @​devareddy05! - feat(gantt): support multiple excludes / includes lines so long exclusion lists can be split into commented groups (#6270)

  • #7708 4e63e9d Thanks @​txmxthy! - feat(architecture): add align row|column {ids…} directive to architecture-beta diagrams so authors can declare horizontal or vertical alignment of services explicitly.

  • #7760 05223be Thanks @​ngdaniels! - feat(pie): Enhance Pie Chart - Enable donut chart, Set legend position, and highlight slice

  • #7251 216e4e9 Thanks @​ydah! - feat(railroad): Add support for Railroad Diagrams (Syntax Diagrams) with four input syntaxes: IR (railroad-beta), EBNF (railroad-ebnf-beta), ABNF (railroad-abnf-beta), and PEG (railroad-peg-beta).

  • #7774 e5c75e6 Thanks @​ngdaniels! - feat(xychart): enable rotate label on X-axis

  • #7791 974fa7b Thanks @​knsv-bot! - feat(swimlane): add swimlane as a standalone diagram type with a dedicated layered orthogonal layout algorithm

Patch Changes

... (truncated)

Commits
  • 7c0cafc Version Packages: v11.16.0 (#7916)
  • 26acd1a Merge pull request #7915 from mermaid-js/release/11.16.0
  • 5a8eae7 Merge branch 'master' into release/11.16.0
  • dd5ea77 Merge pull request #7913 from mermaid-js/pebr/fix-changesets
  • 658ee66 docs: fix missing bumps of @mermaid-js/parser
  • 04259a1 docs: fix author and commit on examples changeset
  • c9dcfb1 docs: update changeset diagram scopes
  • a34dab9 docs: remove swimlane/cynefin bugfix changesets
  • e81f31f docs: remove local-editor changeset
  • 7223f03 Minor correction
  • Additional commits viewable in compare view

Updates postcss from 8.5.8 to 8.5.19

Release notes

Sourced from postcss's releases.

8.5.19

  • Fixed cleaning before for new nodes inserted to Root (by @​MahinAnowar).

8.5.18

  • Restricted loading previous source maps file to the opts.from folder for security reasons (use unsafeMap: true to disable the check).

8.5.17

  • Fixed Maximum call stack size exceeded error.
  • Fixed Prototype hijacking for postcss.fromJSON().
  • Fixed Input#origin() for unmapped end position (by @​chatman-media).

8.5.16

8.5.15

  • Fixed declaration parsing performance (by @​homanp).

8.5.14

8.5.13

  • Fixed postcss-scss commend regression.

8.5.12

  • Fixed reading any file via user-generated CSS.
  • Added opts.unsafeMap to disable checks.

8.5.11

  • Fixed nested brackets parsing performance (by @​offset).

8.5.10

  • Fixed XSS via unescaped </style> in non-bundler cases (by @​TharVid).

8.5.9

  • Speed up source map encoding paring in case of the error.
Changelog

Sourced from postcss's changelog.

8.5.19

  • Fixed cleaning before for new nodes inserted to Root (by @​MahinAnowar).

8.5.18

  • Restricted loading previous source maps file to the opts.from folder for security reasons (use unsafeMap: true to disable the check).

8.5.17

  • Fixed Maximum call stack size exceeded error.
  • Fixed Prototype hijacking for postcss.fromJSON().
  • Fixed Input#origin() for unmapped end position (by @​chatman-media).

8.5.16

8.5.15

  • Fixed declaration parsing performance (by @​homanp).

8.5.14

8.5.13

  • Fixed postcss-scss commend regression.

8.5.12

  • Fixed reading any file via user-generated CSS.
  • Added opts.unsafeMap to disable checks.

8.5.11

  • Fixed nested brackets parsing performance (by @​offset).

8.5.10

  • Fixed XSS via unescaped </style> in non-bundler cases (by @​TharVid).

8.5.9

  • Speed up source map encoding paring in case of the error.
Commits
  • 9543b22 Release 8.5.19 version
  • 3d13bf9 Fix CI on Windows too
  • 00d0dd2 Keep explicitly set raws.before when inserting nodes into root (#2111)
  • 7a05b33 Temporary fix CI
  • 4c0d194 Release 8.5.18 version
  • 92b4e78 Update dependencies
  • 95663d3 Limit where source map can be loaded for security reasons
  • 74e25ae Release 8.5.17 version
  • d1518af Fix Maximum call stack size exceeded error
  • 2421312 Fix linter
  • Additional commits viewable in compare view
Maintainer changes

This version was pushed to npm by GitHub Actions, a new releaser for postcss since your current version.


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@dependabot
build(deps): bump the npm_and_yarn group across 2 directories with 8 …
f0b595a 
…updates

Bumps the npm_and_yarn group with 2 updates in the /skills/biomcp-server/repo directory: [hono](https://github.com/honojs/hono) and [undici](https://github.com/nodejs/undici).
Bumps the npm_and_yarn group with 6 updates in the /skills/nature-paper-to-patent/scripts/disclosure directory:

| Package | From | To |
| --- | --- | --- |
| [ws](https://github.com/websockets/ws) | `8.20.0` | `8.21.1` |
| [basic-ftp](https://github.com/patrickjuchli/basic-ftp) | `5.2.0` | `5.3.1` |
| [dompurify](https://github.com/cure53/DOMPurify) | `3.3.3` | `3.4.12` |
| [ip-address](https://github.com/beaugunderson/ip-address) | `10.1.0` | `10.2.0` |
| [mermaid](https://github.com/mermaid-js/mermaid) | `11.14.0` | `11.16.0` |
| [postcss](https://github.com/postcss/postcss) | `8.5.8` | `8.5.19` |



Updates `hono` from 4.12.21 to 4.12.25
- [Release notes](https://github.com/honojs/hono/releases)
- [Commits](honojs/hono@v4.12.21...v4.12.25)

Updates `undici` from 5.29.0 to 7.28.0
- [Release notes](https://github.com/nodejs/undici/releases)
- [Commits](nodejs/undici@v5.29.0...v7.28.0)

Updates `ws` from 8.18.0 to 8.21.0
- [Release notes](https://github.com/websockets/ws/releases)
- [Commits](websockets/ws@8.20.0...8.21.1)

Updates `ws` from 8.20.0 to 8.21.1
- [Release notes](https://github.com/websockets/ws/releases)
- [Commits](websockets/ws@8.20.0...8.21.1)

Updates `basic-ftp` from 5.2.0 to 5.3.1
- [Release notes](https://github.com/patrickjuchli/basic-ftp/releases)
- [Changelog](https://github.com/patrickjuchli/basic-ftp/blob/master/CHANGELOG.md)
- [Commits](patrickjuchli/basic-ftp@v5.2.0...v5.3.1)

Updates `dompurify` from 3.3.3 to 3.4.12
- [Release notes](https://github.com/cure53/DOMPurify/releases)
- [Commits](cure53/DOMPurify@3.3.3...3.4.12)

Updates `ip-address` from 10.1.0 to 10.2.0
- [Commits](beaugunderson/ip-address@v10.1.0...v10.2.0)

Updates `mermaid` from 11.14.0 to 11.16.0
- [Release notes](https://github.com/mermaid-js/mermaid/releases)
- [Commits](https://github.com/mermaid-js/mermaid/compare/mermaid@11.14.0...mermaid@11.16.0)

Updates `postcss` from 8.5.8 to 8.5.19
- [Release notes](https://github.com/postcss/postcss/releases)
- [Changelog](https://github.com/postcss/postcss/blob/main/CHANGELOG.md)
- [Commits](postcss/postcss@8.5.8...8.5.19)

---
updated-dependencies:
- dependency-name: hono
  dependency-version: 4.12.25
  dependency-type: direct:production
  dependency-group: npm_and_yarn
- dependency-name: undici
  dependency-version: 7.28.0
  dependency-type: indirect
  dependency-group: npm_and_yarn
- dependency-name: ws
  dependency-version: 8.21.0
  dependency-type: indirect
  dependency-group: npm_and_yarn
- dependency-name: ws
  dependency-version: 8.21.1
  dependency-type: indirect
  dependency-group: npm_and_yarn
- dependency-name: basic-ftp
  dependency-version: 5.3.1
  dependency-type: indirect
  dependency-group: npm_and_yarn
- dependency-name: dompurify
  dependency-version: 3.4.12
  dependency-type: indirect
  dependency-group: npm_and_yarn
- dependency-name: ip-address
  dependency-version: 10.2.0
  dependency-type: indirect
  dependency-group: npm_and_yarn
- dependency-name: mermaid
  dependency-version: 11.16.0
  dependency-type: indirect
  dependency-group: npm_and_yarn
- dependency-name: postcss
  dependency-version: 8.5.19
  dependency-type: indirect
  dependency-group: npm_and_yarn
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code labels Jul 19, 2026
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