Apollo3 setup via Docker Compose

[mrizwan-riaz]

Hi,

I am trying to set up Apollo 3 (v0.3.8) with JBrowse 2 (v3.6.5) using Docker Compose. I have encountered issues loading the Apollo plugin, with errors like:

TypeError: n.getContext is not a function
@http://.../data/apollo.js:1:753898
@http://.../data/apollo.js:1:1538. .@http://.../data/apollo.js:1:2635
2657/loadUMDPlugin/<@http://.../static/js/880.b4c8b136.chunk.js:1:1686
loadUMDPlugin@http://.../static/js/880.b4c8b136.chunk.js:1:1703
loadPlugin@http://.../static/js/880.b4c8b136.chunk.js:1:2186
2657/load/<@http://.../static/js/880.b4c8b136.chunk.js:1:2627
load@http://.../static/js/880.b4c8b136.chunk.js:1:2594
2657/n<@http://.../static/js/880.b4c8b136.chunk.js:1:3127

This error occurs when I try to load reference sequence or any annotation track in the JBrowse.

Any help is much appreciated!

[garrettjstevens]

This seems like it's probably from Apollo expecting a different version of JBrowse. How are you specifying the version of Apollo? If you're using the latest tag, that would actually bring in v0.3.11 of Apollo, which would expect the latest version of JBrowse (which is v4.1.14).

[mrizwan-riaz]

Thanks for your response. I am assigning version in the client service section of compose.yml,
JBROWSE_VERSION: 3.6.5
APOLLO_VERSION: 0.3.8
that are passed to the Dockerfile to fetch specific versions according to this setup guide: https://apollo.jbrowse.org/docs/installation/examples/docker-compose

Now updating Apollo to 0.3.11 and JBrowse to 4.1.14 has fixed this error.