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Fix publish workflow for npm trusted publishing: remove token overrid… #69

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Fix publish workflow for npm trusted publishing: remove token overrid…

Fix publish workflow for npm trusted publishing: remove token overrid… #69

Triggered via push March 28, 2026 19:56
@cmdcolincmdcolin
pushed d88a3e7
main
Status Failure
Total duration 23s
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push.yml

on: push
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4 errors and 1 warning
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Process completed with exit code 1.
test/parse.test.ts > GFF3 parser > can cursorily parse tomato_test.gff3: test/parse.test.ts#L40
Error: Snapshot `GFF3 parser > can cursorily parse tomato_test.gff3 1` mismatched - Expected + Received @@ -4151,56 +4151,1112 @@ "start": 64398103, "strand": "+", "type": "exon", }, ], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], + [ + { + "attributes": { + "ID": [ + "CDS:Solyc03g123520.2.1.2", + ], + "Parent": [ + "mRNA:Solyc03g123520.2.1", + ], + "from_BOGAS": [ + "1", + ], + }, + "child_features": [], + "derived_features": [], + "end": 64398307, + "phase": "0", + "score": null, + "seq_id": "SL2.40ch03", + "source": "ITAG_eugene", + "start": 64398103, + "strand": "+", + "type": "CDS", + }, + ], + [ + { + "attributes": { + "ID": [ + "intron:Solyc03g123520.2.1.2", + ], + "Parent": [ + "mRNA:Solyc03g123520.2.1", + ], + "from_BOGAS": [ + "1", + ], + }, + "child_features": [], + "derived_features": [], + "end": 64398400, + "phase": null, + "score": null, + "seq_id": "SL2.40ch03", + "source": "ITAG_eugene", + "start": 64398308, + "strand": "+", + "type": "intron", + }, + ], + [ + { + "attributes": { + "ID": [ + "exon:Solyc03g123520.2.1.3", + ], + "Parent": [ + "mRNA:Solyc03g123520.2.1", + ], + "from_BOGAS": [ + "1", + ], + }, + "child_features": [], + "derived_features": [], + "end": 64398566, + "phase": "0", + "score": null, + "seq_id": "SL2.40ch03", + "source": "ITAG_eugene", + "start": 64398401, + "strand": "+", + "type": "exon", + }, + ], + [ + { + "attributes": { + "ID": [ + "CDS:Solyc03g123520.2.1.3", + ], +
test/parse.test.ts > GFF3 parser > can cursorily parse au9_scaffold_subset.gff3: test/parse.test.ts#L40
Error: Snapshot `GFF3 parser > can cursorily parse au9_scaffold_subset.gff3 1` mismatched - Expected + Received @@ -4562,53 +4562,15198 @@ "strand": "+", "type": "mRNA", }, ], ], - "derived_features": [Array], + "derived_features": [], "end": 173951, "phase": null, "score": 0.49, "seq_id": "Group1.36", "source": "AU9", "start": 168255, + "strand": "+", + "type": "gene", + }, + ], + [ + { + "attributes": { + "ID": [ + "au9.g992", + ], + "Name": [ + "au9.g992", + ], + }, + "child_features": [ + [ + { + "attributes": { + "ID": [ + "au9.g992.t1", + ], + "Name": [ + "au9.g992.t1", + ], + "Parent": [ + "au9.g992", + ], + }, + "child_features": [ + [ + { + "attributes": { + "Parent": [ + "au9.g992.t1", + ], + }, + "child_features": [], + "derived_features": [], + "end": 130752, + "phase": null, + "score": 0.41, + "seq_id": "Group1.36", + "source": "AU9", + "start": 130493, + "strand": "+", + "type": "five_prime_UTR", + }, + ], + [ + { + "attributes": { + "Parent": [ + "au9.g992.t1", + ], + }, + "child_features": [], + "derived_features": [], + "end": 130755, + "phase": "0", + "score": null, + "seq_id": "Group1.36", + "source": "AU9", + "start": 130753, + "strand": "+", + "type": "start_codon", + }, + ], + [ + { + "attributes": { + "Parent": [ + "au9.g992.t1", + ], + }, + "child_features": [], + "derived_features": [], + "end": 130833, + "phase": "0", + "score": 1, + "seq_id": "Group1.36", + "source": "AU9", + "start": 130753, + "strand": "+", + "type": "CDS", + }, + ], + [ + { + "attributes": { + "Parent": [ + "au9.g992.t1", + ], + }, + "child_features": [], + "derived_features": [], + "end": 131549, + "phase": "0", + "score": 1, + "seq_id": "Group1.36", + "source": "AU9", + "start": 131135, + "strand": "+", + "type": "CDS", + }, + ], + [ + { + "attributes": { + "Parent": [ + "au9.g992.t1", + ], + }, + "child_features": [], + "derived_features": [], + "end": 131813, + "phase": "2", + "score": 1, + "seq_id": "Group1.36", + "source": "AU9", + "start": 131626, + "strand": "+", + "type": "CDS", +
test/parse.test.ts > GFF3 parser > can cursorily parse messy_protein_domains.gff3: test/parse.test.ts#L40
Error: Snapshot `GFF3 parser > can cursorily parse messy_protein_domains.gff3 1` mismatched - Expected + Received @@ -17106,241 +17106,5176 @@ "start": 2, "strand": "+", "type": "match", }, ], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], - [Array], + [ + { + "attributes": { + "Name": [ + "IPR020472", + ], + "Note": [ + "G-protein beta WD-40 repeat, region", + ], + }, + "child_features": [], + "derived_features": [], + "end": 42, + "phase": null, + "score": null, + "seq_id": "Solyc00g059100.1.1", + "source": "ITAG_interpro", + "start": 28, + "strand": "+", + "type": "match", + }, + ], + [ + { + "attributes": { + "Name": [ + "IPR001087", + ], + "Note": [ + "Lipase, GDSL", + ], + }, + "child_features": [], + "derived_features": [], + "end": 366, + "phase": null, + "score": null, + "seq_id": "Solyc00g058900.1.1"
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