Update README and package.json for GMOD org move

- Update GitHub URLs from cmdcolin to GMOD org
- Fix stale ParseOptions API docs, replace with actual exported functions
- Fix broken usage example (gff.parseStringSync → parseStringSync)
- Remove outdated --save flag and arrayrefs terminology

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Author: cmdcolin

README.md

@@ -1,36 +1,29 @@
 # gff-nostream
 
 [![NPM version](https://img.shields.io/npm/v/gff-nostream.svg?style=flat-square)](https://npmjs.org/package/gff-nostream)
-[![Build Status](https://img.shields.io/github/actions/workflow/status/cmdcolin/gff-nostream/push.yml?branch=main)](https://github.com/cmdcolin/gff-nostream/actions?query=branch%3Amain+workflow%3APush+)
+[![Build Status](https://img.shields.io/github/actions/workflow/status/GMOD/gff-nostream/push.yml?branch=main)](https://github.com/GMOD/gff-nostream/actions?query=branch%3Amain+workflow%3APush+)
 
-Parse GFF3 data. This is a simplified version of
-[@gmod/gff](https://github.com/cmdcolin/gff-js) with just basic parsing and no
-node.js stream module usage
+Parse GFF3 data. A simplified version of [@gmod/gff](https://github.com/GMOD/gff-js) with no Node.js stream dependency.
 
 ## Install
 
-    $ npm install --save gff-nostream
+    $ npm install gff-nostream
 
 ## Usage
 
 ```js
 import { parseStringSync } from 'gff-nostream'
 import fs from 'fs'
 
-// parse a string of gff3 synchronously
 const stringOfGFF3 = fs.readFileSync('my_annotations.gff3', 'utf8')
-const arrayOfThings = gff.parseStringSync(stringOfGFF3)
+const features = parseStringSync(stringOfGFF3)
 ```
 
 ## Object format
 
-### features
+In GFF3, features can have more than one location. Features are returned as arrays of all lines sharing the same ID. Values that are `.` in GFF3 are `null` in the output.
 
-In GFF3, features can have more than one location. We parse features as
-arrayrefs of all the lines that share that feature's ID. Values that are `.` in
-the GFF3 are `null` in the output.
-
-A simple feature that's located in just one place:
+A simple feature located in one place:
 
 ```json
 [
@@ -94,68 +87,18 @@ A CDS called `cds00001` located in two places:
 
 ## API
 
-<!-- Generated by documentation.js. Update this documentation by updating the source code. -->
-
-#### Table of Contents
-
-- [ParseOptions](#parseoptions)
-  - [disableDerivesFromReferences](#disablederivesfromreferences)
-  - [encoding](#encoding)
-  - [parseFeatures](#parsefeatures)
-  - [parseDirectives](#parsedirectives)
-  - [parseComments](#parsecomments)
-  - [parseSequences](#parsesequences)
-  - [parseAll](#parseall)
-
-### ParseOptions
-
-Parser options
-
-#### disableDerivesFromReferences
-
-Whether to resolve references to derives from features
-
-Type:
-[boolean](https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Boolean)
-
-#### encoding
-
-Text encoding of the input GFF3. default 'utf8'
-
-Type: BufferEncoding
-
-#### parseFeatures
-
-Whether to parse features, default true
-
-Type:
-[boolean](https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Boolean)
-
-#### parseDirectives
-
-Whether to parse directives, default false
-
-Type:
-[boolean](https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Boolean)
-
-#### parseComments
-
-Whether to parse comments, default false
+### `parseStringSync(str: string): GFF3Feature[]`
 
-Type:
-[boolean](https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Boolean)
+Synchronously parse a GFF3 string and return an array of features.
 
-#### parseSequences
+### `parseStringSyncJBrowse(str: string): JBrowseFeature[]`
 
-Whether to parse sequences, default true
+Synchronously parse a GFF3 string and return features in JBrowse format (flat objects with `subfeatures` instead of `child_features`).
 
-Type:
-[boolean](https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Boolean)
+### `parseRecords(records: LineRecord[]): GFF3Feature[]`
 
-#### parseAll
+Parse an array of `LineRecord` objects. Useful when managing raw line data directly (e.g. from an indexed file with byte offsets).
 
-Parse all features, directives, comments, and sequences. Overrides other parsing
-options. Default false.
+### `parseRecordsJBrowse(records: LineRecord[]): JBrowseFeature[]`
 
-Type:
-[boolean](https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Boolean)
+Same as `parseRecords` but returns JBrowse-format features.

package.json

@@ -5,7 +5,7 @@
   "license": "MIT",
   "repository": {
     "type": "git",
-    "url": "https://github.com/cmdcolin/gff-nostream.git"
+    "url": "https://github.com/GMOD/gff-nostream.git"
   },
   "type": "module",
   "types": "./dist/index.d.ts",