Updates

Updates

Update dist

Updates

Updates

Author: cmdcolin

.prettierignore

@@ -0,0 +1 @@
+dist

dist/jbrowse-plugin-mafviewer/dist/jbrowse-plugin-mafviewer.umd.production.min.js

@@ -1,5 +1,5 @@
 {
-  "version": "1.4.5",
+  "version": "1.4.6",
   "license": "MIT",
   "name": "jbrowse-plugin-mafviewer",
   "keywords": [
@@ -15,7 +15,7 @@
   ],
   "scripts": {
     "clean": "rimraf dist",
-    "start": "node esbuild.mjs",
+    "start": "node esbuild.mjs --watch",
     "test": "vitest",
     "format": "prettier --write .",
     "prebuild": "yarn clean",
@@ -29,9 +29,10 @@
     "@babel/preset-react": "^7.10.4",
     "@emotion/react": "^11.10.4",
     "@fal-works/esbuild-plugin-global-externals": "^2.1.2",
-    "@jbrowse/core": "^3.0.1",
-    "@jbrowse/plugin-data-management": "^3.0.1",
-    "@jbrowse/plugin-linear-genome-view": "^3.0.1",
+    "@jbrowse/core": "^4.1.1",
+    "@jbrowse/mobx-state-tree": "^5.4.1",
+    "@jbrowse/plugin-data-management": "^4.1.1",
+    "@jbrowse/plugin-linear-genome-view": "^4.1.1",
     "@mui/material": "^7.0.1",
     "@mui/system": "^7.0.1",
     "@mui/x-data-grid": "^8.2.0",
@@ -48,7 +49,6 @@
     "eslint-plugin-unicorn": "^62.0.0",
     "mobx": "^6.0.0",
     "mobx-react": "^9.0.1",
-    "mobx-state-tree": "^5.4.1",
     "prettier": "^3.4.2",
     "pretty-bytes": "^7.0.0",
     "react": "^19.0.0",
@@ -62,7 +62,7 @@
     "vitest": "^4.0.5"
   },
   "dependencies": {
-    "@gmod/bgzf-filehandle": "^5.0.2",
+    "@gmod/bgzf-filehandle": "^6.0.12",
     "abortable-promise-cache": "^1.5.0",
     "buffer": "^6.0.3",
     "d3-array": "^3.2.4",

dist/jbrowse-plugin-mafviewer/package.json

@@ -1,5 +1,5 @@
 {
-  "version": "0.0.18",
+  "version": "0.0.19",
   "name": "jbrowse-plugin-protein3d",
   "keywords": [
     "jbrowse",
@@ -32,7 +32,6 @@
   "dependencies": {
     "@jbrowse/plugin-linear-genome-view": "^4.1.1",
     "@mui/icons-material": "^7.0.1",
-    "buffer": "^6.0.3",
     "clustal-js": "^2.0.11",
     "g2p_mapper": "^2.0.0",
     "molstar": "^5.6.1",
@@ -41,6 +40,7 @@
   "devDependencies": {
     "@emotion/react": "^11.13.0",
     "@eslint/compat": "^2.0.0",
+    "@eslint/js": "^9.39.2",
     "@fal-works/esbuild-plugin-global-externals": "^2.1.2",
     "@jbrowse/core": "^4.1.1",
     "@jbrowse/mobx-state-tree": "^5.4.2",
@@ -54,11 +54,9 @@
     "eslint-plugin-react": "^7.20.3",
     "eslint-plugin-react-hooks": "^7.0.0",
     "eslint-plugin-react-refresh": "^0.4.11",
-    "eslint-plugin-unicorn": "^62.0.0",
-    "fp-ts": "^2.16.9",
+    "fp-ts": "^2.16.11",
     "mobx": "^6.0.0",
     "mobx-react": "^9.0.1",
-    "npm-run-all": "^4.1.5",
     "prettier": "^3.8.1",
     "pretty-bytes": "^7.0.0",
     "puppeteer": "^24.36.0",

dist/jbrowse-plugin-protein3d/dist/jbrowse-plugin-protein3d.umd.production.min.js

@@ -3,18 +3,19 @@
   "license": "MIT",
   "scripts": {
     "download": "node download-plugins-npm-api.ts",
+    "format": "prettier --write .",
     "generate": "node generate-plugins.ts",
     "update": "yarn download && yarn generate",
-    "upload": "aws s3 sync dist s3://jbrowse.org/plugins/ && aws s3 cp new_plugins.json s3://jbrowse.org/plugin-store/plugins2.json",
-    "deploy": "yarn update && git add . && (git diff --cached --quiet || (git commit -m 'Updates' && git push)) && yarn upload",
-    "postupload": "AWS_PAGER=\"\" aws cloudfront create-invalidation --distribution-id E12EBG02P68TDO --paths \"/plugins/*\"",
+    "upload": "aws s3 sync dist s3://jbrowse.org/plugins/ --cache-control 'no-cache, must-revalidate' && aws s3 cp new_plugins.json s3://jbrowse.org/plugin-store/plugins2.json --cache-control 'no-cache, must-revalidate'",
+    "invalidate": "AWS_PAGER=\"\" aws cloudfront create-invalidation --distribution-id E13LGELJOT4GQO --paths \"/plugins/*\" \"/plugin-store/*\"",
+    "deploy": "yarn update && git add . && (git diff --cached --quiet || (git commit -m 'Updates' && git push)) && yarn upload && yarn invalidate",
     "postdeploy": "git push --follow-tags"
   },
   "dependencies": {
-    "prettier": "^3.5.3",
-    "tar": "^7.5.2"
+    "prettier": "^3.8.1",
+    "tar": "^7.5.6"
   },
   "devDependencies": {
-    "@types/node": "^24.9.1"
+    "@types/node": "^25.0.10"
   }
 }

dist/jbrowse-plugin-protein3d/package.json

@@ -9,10 +9,10 @@
   dependencies:
     minipass "^7.0.4"
 
-"@types/node@^24.9.1":
-  version "24.10.9"
-  resolved "https://registry.yarnpkg.com/@types/node/-/node-24.10.9.tgz#1aeb5142e4a92957489cac12b07f9c7fe26057d0"
-  integrity sha512-ne4A0IpG3+2ETuREInjPNhUGis1SFjv1d5asp8MzEAGtOZeTeHVDOYqOgqfhvseqg/iXty2hjBf1zAOb7RNiNw==
+"@types/node@^25.0.10":
+  version "25.0.10"
+  resolved "https://registry.yarnpkg.com/@types/node/-/node-25.0.10.tgz#4864459c3c9459376b8b75fd051315071c8213e7"
+  integrity sha512-zWW5KPngR/yvakJgGOmZ5vTBemDoSqF3AcV/LrO5u5wTWyEAVVh+IT39G4gtyAkh3CtTZs8aX/yRM82OfzHJRg==
   dependencies:
     undici-types "~7.16.0"
 
@@ -33,15 +33,15 @@ minizlib@^3.1.0:
   dependencies:
     minipass "^7.1.2"
 
-prettier@^3.5.3:
-  version "3.8.0"
-  resolved "https://registry.yarnpkg.com/prettier/-/prettier-3.8.0.tgz#f72cf71505133f40cfa2ef77a2668cdc558fcd69"
-  integrity sha512-yEPsovQfpxYfgWNhCfECjG5AQaO+K3dp6XERmOepyPDVqcJm+bjyCVO3pmU+nAPe0N5dDvekfGezt/EIiRe1TA==
+prettier@^3.8.1:
+  version "3.8.1"
+  resolved "https://registry.yarnpkg.com/prettier/-/prettier-3.8.1.tgz#edf48977cf991558f4fcbd8a3ba6015ba2a3a173"
+  integrity sha512-UOnG6LftzbdaHZcKoPFtOcCKztrQ57WkHDeRD9t/PTQtmT0NHSeWWepj6pS0z/N7+08BHFDQVUrfmfMRcZwbMg==
 
-tar@^7.5.2:
-  version "7.5.3"
-  resolved "https://registry.yarnpkg.com/tar/-/tar-7.5.3.tgz#e1a41236e32446f75e63b720222112c4ffe5b3a1"
-  integrity sha512-ENg5JUHUm2rDD7IvKNFGzyElLXNjachNLp6RaGf4+JOgxXHkqA+gq81ZAMCUmtMtqBsoU62lcp6S27g1LCYGGQ==
+tar@^7.5.6:
+  version "7.5.6"
+  resolved "https://registry.yarnpkg.com/tar/-/tar-7.5.6.tgz#2db7a210748a82f0a89cc31527b90d3a24984fb7"
+  integrity sha512-xqUeu2JAIJpXyvskvU3uvQW8PAmHrtXp2KDuMJwQqW8Sqq0CaZBAQ+dKS3RBXVhU4wC5NjAdKrmh84241gO9cA==
   dependencies:
     "@isaacs/fs-minipass" "^4.0.0"
     chownr "^3.0.0"