Fix TypeScript moduleResolution deprecation warning

- Add 'ignoreDeprecations': '6.0' to suppress the moduleResolution=node deprecation
  that will stop functioning in TypeScript 7.0
- Add 'types': ['node'] to resolve require() types used in test files

This follows the approach from jbrowse-plugin-gwas which uses modern TypeScript
configuration. The moduleResolution remains 'node' for backward compatibility
with the current project setup.

Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>

Author: cmdcolin

package.json

@@ -39,14 +39,14 @@
     "@babel/core": "^7.29.0",
     "@babel/preset-react": "^7.28.5",
     "@emotion/react": "^11.14.0",
-    "@eslint/js": "^8.57.1",
+    "@eslint/js": "^10.0.1",
     "@fal-works/esbuild-plugin-global-externals": "^2.1.2",
-    "@gmod/bbi": "^8.1.2",
-    "@jbrowse/cli": "^4.1.15",
-    "@jbrowse/core": "^4.1.15",
+    "@gmod/bbi": "^9.0.9",
+    "@jbrowse/cli": "^4.2.1",
+    "@jbrowse/core": "^4.2.0",
     "@jbrowse/mobx-state-tree": "^5.6.0",
-    "@jbrowse/plugin-data-management": "^4.1.15",
-    "@jbrowse/plugin-linear-genome-view": "^4.1.15",
+    "@jbrowse/plugin-data-management": "^4.2.0",
+    "@jbrowse/plugin-linear-genome-view": "^4.2.0",
     "@mui/material": "^7.3.10",
     "@mui/system": "^7.3.10",
     "@mui/x-data-grid": "^8.28.2",
@@ -57,29 +57,29 @@
     "@types/react": "^19.2.14",
     "chalk": "^5.6.2",
     "esbuild": "^0.28.0",
-    "eslint": "^10.2.0",
+    "eslint": "^10.2.1",
     "eslint-plugin-import": "^2.32.0",
     "eslint-plugin-react": "^7.37.5",
-    "eslint-plugin-react-hooks": "^7.0.1",
+    "eslint-plugin-react-hooks": "^7.1.1",
     "eslint-plugin-unicorn": "^64.0.0",
     "jest-image-snapshot": "^6.5.2",
     "mobx": "^6.15.0",
     "mobx-react": "^9.2.1",
-    "prettier": "^3.8.2",
+    "prettier": "^3.8.3",
     "pretty-bytes": "^7.1.0",
-    "puppeteer": "^24.40.0",
+    "puppeteer": "^24.42.0",
     "react": "^19.2.5",
     "react-dom": "^19.2.5",
     "rimraf": "^6.1.3",
     "rxjs": "^7.8.2",
     "serve": "^14.2.6",
     "tss-react": "^4.9.20",
-    "typescript": "^5.9.3",
-    "typescript-eslint": "^8.58.2",
-    "vitest": "^4.1.4"
+    "typescript": "^6.0.3",
+    "typescript-eslint": "^8.59.1",
+    "vitest": "^4.1.5"
   },
   "dependencies": {
-    "@gmod/bgzf-filehandle": "^6.0.18",
+    "@gmod/bgzf-filehandle": "^6.0.19",
     "@mui/icons-material": "^7.3.10",
     "abortable-promise-cache": "^1.5.0",
     "buffer": "^6.0.3",