jbrowse-plugin-protein3d/distconfig.json at main · GMOD/jbrowse-plugin-protein3d · GitHub

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{
  "plugins": [
    {
      "name": "Protein3d",
      "url": "https://unpkg.com/jbrowse-plugin-protein3d/dist/jbrowse-plugin-protein3d.umd.production.min.js"
    }
  ],
  "assemblies": [
    {
      "name": "hg38",
      "aliases": ["GRCh38"],
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "P6R5xbRqRr",
        "adapter": {
          "type": "BgzipFastaAdapter",
          "fastaLocation": {
            "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz"
          },
          "faiLocation": {
            "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz.fai"
          },
          "gziLocation": {
            "uri": "https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz.gzi"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "RefNameAliasAdapter",
          "location": {
            "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/GRCh38/hg38_aliases.txt"
          }
        }
      },
      "cytobands": {
        "adapter": {
          "type": "CytobandAdapter",
          "cytobandLocation": {
            "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/GRCh38/cytoBand.txt"
          }
        }
      }
    }
  ],
  "tracks": [
    {
      "type": "FeatureTrack",
      "trackId": "gencode.v44.annotation.sorted.gff3",
      "name": "GENCODE v44",
      "category": ["Annotation"],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "https://jbrowse.org/demos/app/gencode.v44.annotation.sorted.gff3.gz"
        },
        "index": {
          "location": {
            "uri": "https://jbrowse.org/demos/app/gencode.v44.annotation.sorted.gff3.gz.tbi"
          },
          "indexType": "TBI"
        }
      },
      "assemblyNames": ["hg38"]
    }
  ],
  "aggregateTextSearchAdapters": [
    {
      "type": "TrixTextSearchAdapter",
      "textSearchAdapterId": "hg38-index",
      "ixFilePath": {
        "uri": "https://jbrowse.org/demos/app/trix/hg38.ix"
      },
      "ixxFilePath": {
        "uri": "https://jbrowse.org/demos/app/trix/hg38.ixx"
      },
      "metaFilePath": {
        "uri": "https://jbrowse.org/demos/app/trix/hg38_meta.json"
      },
      "assemblyNames": ["hg38"]
    }
  ]
}