GSA · nickumia-reisys · Jul 17, 2023 · May 22, 2023 · May 22, 2023 · May 22, 2023
diff --git a/.env b/.env
@@ -61,7 +61,6 @@ CKAN__HARVEST__MQ__HOSTNAME=redis
 CKAN__HARVEST__MQ__PORT=6379
 CKAN__HARVEST__MQ__REDIS_DB=1
 CKAN__HARVEST__LOG_LEVEL=info
-CKAN__HARVEST__LOG_SCOPE=0
 
 CKAN__HARVEST__STATUS_MAIL__ALL=True
 
@@ -70,7 +69,7 @@ CKANEXT__GEODATAGOV__BUREAU_CSV__URL_DEFAULT=https://resources.data.gov/schemas/
 
 CKAN__SPATIAL__SRID=4326
 CKAN__SPATIAL__VALIDATOR__PROFILES=iso19139ngdc
-CKANEXT__SPATIAL__SEARCH_BACKEND=solr
+CKANEXT__SPATIAL__SEARCH_BACKEND=solr-bbox
 
 CKAN___GOOGLEANALYTICS__IDS=UA-1010101-1 UA-1010101-2 
 CKAN__TRACKING_ENABLED=true

diff --git a/.profile b/.profile
@@ -85,6 +85,7 @@ export CKANEXT__SAML2AUTH__IDP_METADATA__LOCAL_PATH="${HOME}/${CKANEXT__SAML2AUT
 # Export settings for CKAN via ckanext-envvars
 export CKAN_REDIS_URL=rediss://:$REDIS_PASSWORD@$REDIS_HOST:$REDIS_PORT
 export CKAN_SQLALCHEMY_URL=$(vcap_get_service db .credentials.uri)
+export CKAN_SQLALCHEMY_URL=${CKAN_SQLALCHEMY_URL/postgres/postgresql}
 export CKAN___SQLALCHEMY__POOL_SIZE=250
 export CKAN___SQLALCHEMY__MAX_OVERFLOW=500
 
@@ -158,7 +159,7 @@ if [[ $MIGRATE_DB = 'True' ]]; then
   # Run migrations
   ckan db upgrade
   ckan harvester initdb
-  ckan archiver init
-  ckan report initdb
-  ckan qa init
+  # ckan archiver init
+  # ckan report initdb
+  # ckan qa init
 fi
diff --git a/ckan/docker-entrypoint.d/10-setup-harvest.sh b/ckan/docker-entrypoint.d/10-setup-harvest.sh
@@ -4,9 +4,18 @@ echo "Init Harvest database tables"
 ckan harvester initdb
 
 echo "turn on gather and fetch workers"
-ckan harvester fetch-consumer &
-ckan harvester fetch-consumer &
-ckan harvester gather-consumer &
+run_fetch () {
+  until ckan harvester fetch-consumer; do
+    sleep 1
+  done
+}
+run_gather () {
+  until ckan harvester gather-consumer; do
+    sleep 1
+  done
+}
+run_fetch &
+run_gather &
 
 echo "check harvest job completion every 10 secs"
 check_harvester () {

diff --git a/ckan/requirements.in b/ckan/requirements.in
@@ -1,5 +1,5 @@
 # CKAN requirements and extensions
-git+https://github.com/gsa/ckan.git@ckan-2.9.8-momentjs#egg=ckan
+ckan==2.10.1
 git+https://github.com/ckan/ckanext-dcat@master#egg=ckanext-dcat
 -e git+https://github.com/ckan/ckanext-harvest.git@master#egg=ckanext-harvest
 -e git+https://github.com/ckan/ckanext-spatial.git@master#egg=ckanext-spatial
@@ -8,21 +8,26 @@ git+https://github.com/GSA/ckanext-saml2auth.git@create_user_via_saml#egg=ckanex
 -e git+https://github.com/ckan/ckanext-archiver.git@master#egg=ckanext-archiver
 -e git+https://github.com/ckan/ckanext-report.git@master#egg=ckanext-report
 
-ckanext-datagovcatalog>=0.0.3
-ckanext-datagovtheme>=0.1.22, ==0.1.*
-ckanext-datajson>=0.1.13
-ckanext-envvars>=0.0.2
-ckanext-geodatagov>=0.1.28
-ckanext-googleanalyticsbasic
-ckanext-metrics-dashboard
+# ckanext-datagovcatalog>=0.0.3
+# ckanext-datagovtheme>=0.1.22
+# ckanext-datajson>=0.1.13
+ckanext-envvars>=0.0.3
+# ckanext-geodatagov>=0.1.28
+# ckanext-googleanalyticsbasic
+# ckanext-metrics-dashboard
+-e git+https://github.com/gsa/ckanext-geodatagov.git@ckan-2.10#egg=ckanext-geodatagov
+-e git+https://github.com/gsa/ckanext-datagovcatalog.git@ckan-210#egg=ckanext-datagovcatalog
+-e git+https://github.com/gsa/ckanext-datagovtheme.git@ckan-210#egg=ckanext-datagovtheme
+-e git+https://github.com/gsa/ckanext-datajson.git@ckan-210#egg=ckanext-datajson
+-e git+https://github.com/gsa/ckanext-googleanalyticsbasic.git@ckan-2.10#egg=ckanext-googleanalyticsbasic
+-e git+https://github.com/gsa/ckanext-metrics-dashboard.git@ckan-2.10#egg=ckanext-metrics-dashboard
 
 # Pin for saml2auth to work
 pysaml2==7.0.1
 
 # ckanext-harvest dependencies
 ckantoolkit>=0.0.7
-pika>=1.1.0
-pyOpenSSL>=22.0.0
+pika>=1.1.0,<1.3.0
 # redis==2.10.6 # included in ckan core
 # requests>=2.11.1 # included in ckan core
 # six>=1.12.0 # included in dcat
@@ -40,8 +45,9 @@ argparse
 GeoAlchemy2==0.5.0
 owslib>=0.28.1
 pyparsing>=2.1.10
-pyproj==2.6.1
-Shapely>=1.2.13
+pyproj==3.4.1
+Shapely==2.0.1
+geojson==3.0.1
 # requests>=1.1.0 # included in ckan core
 # six # included in dcat
 
@@ -55,51 +61,50 @@ messytables==0.15.2
 # https://github.com/ckan/ckanext-report/blob/master/requirements.txt
 
 #ckanext-dcat
-rdflib==4.2.2
+rdflib==6.1.1
 # rdflib-jsonld==0.4.0 # ignoring as cannot build on cloud.gov
 geomet>=0.2.0
 future>=0.18.3
-six>=1.15.0
 
 # ckan doesn't advertise its requirements correctly, so let's add them here.
 # https://github.com/ckan/ckan/blob/ckan-2.9.5/requirements.txt
-alembic==1.0.0
-Babel==2.9.1              # Upgraded from CKAN pin
+alembic==1.8.1
+Babel==2.10.3
 Beaker==1.11.0
 bleach==3.3.0
-click==7.1.2
-dominate==2.4.0
-fanstatic==1.1
+blinker==1.5
+click==8.1.3
+dominate==2.7.0
 feedgen==0.9.0
-Flask==2.0
+Flask==2.0.3
 Flask-Babel==1.0.0
 flask-multistatic==1.0
-Jinja2==3.0
-lxml==4.9.1
+Flask-Login==0.6.1
+Jinja2==3.1.2
+Flask-WTF==1.0.1
 pyjwt==2.4.0
-Markdown==3.1.1           # Upgraded from CKAN pin
-passlib==1.7.3
+Markdown==3.4.1
+passlib==1.7.4
 pastedeploy==2.0.1        # manually kept - remove when #4802 is complete
 pathtools==0.1.2          # via watchdog
-polib==1.0.7
-psycopg2==2.8.6
-python-magic==0.4.15
-pysolr==3.6.0
-python-dateutil>=1.5.0
-pytz==2016.7
-PyUtilib==5.7.1
-pyyaml==5.4
-repoze.who==2.3
-Routes==1.13
-rq==1.0
+polib==1.1.1
+psycopg2==2.9.3
+PyJWT==2.4.0
+python-magic==0.4.27
+pysolr==3.9.0
+python-dateutil>=2.8.2
+pytz
+PyUtilib==6.0.0
+pyyaml==6.0
+requests==2.28.1
+rq==1.11.0
 simplejson==3.18.0 # ckan 2.9.5 requires 3.10.0 only
 # Following can be ignored: https://github.com/ckan/ckan/pull/4450
 # sqlalchemy-migrate==0.12.0
-SQLAlchemy==1.3.5
+SQLAlchemy[mypy]==1.4.41
 sqlparse==0.4.4
-tzlocal==1.3
-unicodecsv>=0.9
-webassets==0.12.1
+tzlocal==4.2
+webassets==2.0
 Werkzeug==2.0
 # zope.interface==4.7.2
 

diff --git a/ckan/requirements.txt b/ckan/requirements.txt
@@ -1,115 +1,122 @@
-alembic==1.0.0
+alembic==1.8.1
 async-timeout==4.0.2
-Babel==2.9.1
+Babel==2.10.3
+backports.zoneinfo==0.2.1
 Beaker==1.11.0
 bleach==3.3.0
-boto3==1.26.126
-botocore==1.29.126
-certifi==2022.12.7
+blinker==1.5
+boto3==1.26.137
+botocore==1.29.137
+certifi==2023.5.7
 cffi==1.15.1
-chardet==3.0.4
-git+https://github.com/gsa/ckan.git@4af8efa19edf7259530ccde5c0331a5ccd7f7066#egg=ckan
+chardet==5.1.0
+charset-normalizer==2.1.1
+ckan==2.10.1
 -e git+https://github.com/ckan/ckanext-archiver.git@cbfadf9fbf10405958fdef9f77a7faedc05aa20b#egg=ckanext_archiver
-ckanext-datagovcatalog==0.0.5
-ckanext-datagovtheme==0.1.27
-ckanext-datajson==0.1.18
-ckanext-dcat @ git+https://github.com/ckan/ckanext-dcat@618928be5a211babafc45103a72b6aab4642e964
+-e git+https://github.com/gsa/ckanext-datagovcatalog.git@9db6fcf6a5b63743c573f567749a870df1976bd3#egg=ckanext_datagovcatalog
+-e git+https://github.com/gsa/ckanext-datagovtheme.git@eb310589aa3007516070fc1cdbfdcf7e3dea116d#egg=ckanext_datagovtheme
+-e git+https://github.com/gsa/ckanext-datajson.git@4d6d09b79d8f932303056747706a31aacd195cf6#egg=ckanext_datajson
+ckanext-dcat @ git+https://github.com/ckan/ckanext-dcat@14396e6d03aad3118ee5a232e04052a61edd0893
 ckanext-envvars==0.0.3
-ckanext-geodatagov==0.1.37
-ckanext-googleanalyticsbasic==0.2.0
--e git+https://github.com/ckan/ckanext-harvest.git@89a98d7ff5aa3445d8158921669b8d0b04fa41c3#egg=ckanext_harvest
-ckanext-metrics-dashboard==0.1.5
+-e git+https://github.com/gsa/ckanext-geodatagov.git@cbbcf599b6273fca56ec60f7b5d8ea2301dae415#egg=ckanext_geodatagov
+-e git+https://github.com/gsa/ckanext-googleanalyticsbasic.git@0de6406608a3156ac368ba3ac14ca21be519a2dd#egg=ckanext_googleanalyticsbasic
+-e git+https://github.com/ckan/ckanext-harvest.git@9fb44f79809a1c04dfeb0e1ca2540c5ff3cacef4#egg=ckanext_harvest
+-e git+https://github.com/gsa/ckanext-metrics-dashboard.git@358ad6dbc4ec31ae4e0946cef6609c38920ad5d3#egg=ckanext_metrics_dashboard
 -e git+https://github.com/ckan/ckanext-qa.git@1731b59d2bf82b06f7866c204b26eb7c6c9ea1f9#egg=ckanext_qa
 -e git+https://github.com/ckan/ckanext-report.git@3588577f46d17e5f6ef163bb984d0e7016daef71#egg=ckanext_report
 ckanext-saml2auth @ git+https://github.com/GSA/ckanext-saml2auth.git@c2b12a94430034c522b25d282323a064e2d6a03a
 -e git+https://github.com/ckan/ckanext-spatial.git@17d5a341cf8f40b35b25df91a18ce72c31195ba3#egg=ckanext_spatial
 ckantoolkit==0.0.7
-click==7.1.2
+click==8.1.3
 cryptography==41.0.0
 defusedxml==0.7.1
-dominate==2.4.0
+dominate==2.7.0
 elementpath==4.1.2
-fanstatic==1.1
 feedgen==0.9.0
-Flask==2.0.0
+Flask==2.0.3
 Flask-Babel==1.0.0
+Flask-Login==0.6.1
 flask-multistatic==1.0
+Flask-WTF==1.0.1
 future==0.18.3
 GeoAlchemy2==0.5.0
+geojson==3.0.1
 geomet==1.0.0
 gevent==22.10.2
 greenlet==2.0.2
 gunicorn==20.1.0
 html5lib==1.1
-idna==2.10
+idna==3.4
+importlib-metadata==6.6.0
 importlib-resources==5.12.0
 isodate==0.6.1
 itsdangerous==2.1.2
-Jinja2==3.0.0
+Jinja2==3.1.2
 jmespath==1.0.1
 json-table-schema==0.2.1
 jsonschema==2.4.0
-lxml==4.9.1
+lxml==4.9.2
 Mako==1.2.4
-Markdown==3.1.1
+Markdown==3.4.1
 MarkupSafe==2.1.2
 messytables==0.15.2
+mypy==1.3.0
+mypy-extensions==1.0.0
 newrelic==8.8.0
 nose==1.3.7
 numpy==1.24.3
-OWSLib==0.29.1
+OWSLib==0.29.2
 packaging==23.1
-passlib==1.7.3
+passlib==1.7.4
 PasteDeploy==2.0.1
 pathtools==0.1.2
-pika==1.3.1
+pika==1.2.1
 pip==23.1.2
 ply==3.11
-polib==1.0.7
+polib==1.1.1
 progressbar==2.5
 progressbar2==3.53.3
-psycopg2==2.8.6
+psycopg2==2.9.3
 pycparser==2.21
 PyJWT==2.4.0
 pyOpenSSL==23.2.0
 pyparsing==3.0.9
-pyproj==2.6.1
+pyproj==3.4.1
 pysaml2==7.0.1
-pysolr==3.6.0
+pysolr==3.9.0
 python-dateutil==2.8.2
-python-editor==1.0.4
-python-magic==0.4.15
+python-magic==0.4.27
 python-utils==3.5.2
-pytz==2016.7
-PyUtilib==5.7.1
-PyYAML==5.4
+pytz==2023.3
+pytz-deprecation-shim==0.1.0.post0
+PyUtilib==6.0.0
+PyYAML==6.0
 PyZ3950 @ git+https://github.com/danizen/PyZ3950@6d44a4ab85c8bda3a7542c2c9efdfad46c830219
-rdflib==4.2.2
-redis==4.5.4
-repoze.lru==0.7
-repoze.who==2.3
+rdflib==6.1.1
+redis==4.5.5
 requests==2.31.0
 rfc3987==1.3.8
-Routes==1.13
-rq==1.0
-s3transfer==0.6.0
+rq==1.11.0
+s3transfer==0.6.1
 setuptools==67.1.0
 shapely==2.0.1
-shutilwhich==1.1.0
 simplejson==3.18.0
 six==1.16.0
-SQLAlchemy==1.3.5
+SQLAlchemy==1.4.41
+sqlalchemy2-stubs==0.0.2a34
 sqlparse==0.4.4
-tzlocal==1.3
-unicodecsv==0.14.1
+tomli==2.0.1
+typing_extensions==4.5.0
+tzdata==2023.3
+tzlocal==4.2
 urllib3==1.26.15
-webassets==0.12.1
+webassets==2.0
 webencodings==0.5.1
-WebOb==1.8.7
 Werkzeug==2.0.0
 wheel==0.40.0
+WTForms==3.0.1
 xlrd==2.0.1
-xmlschema==2.2.3
+xmlschema==2.3.0
 zipp==3.15.0
 zope.event==4.6
 zope.interface==6.0
diff --git a/ckan/setup/ckan.ini b/ckan/setup/ckan.ini
@@ -62,6 +62,8 @@ who.log_file = %(cache_dir)s/who_log.ini
 who.timeout = 900
 who.secure = True
 
+ckan.csrf_protection.ignore_extensions=False
+
 ## Database Settings
 # sqlalchemy.url = postgresql://ckan_default:pass@localhost/ckan_default
 # Possible tweaks to production sizing
@@ -226,7 +228,7 @@ ckan.jobs.timeout = 180
 ckan.tracking_enabled = True
 
 ## Spatial settings
-ckanext.spatial.search_backend = solr
+ckanext.spatial.search_backend = solr-bbox
 
 ## Harvest settings
 # ckanext-harvest will use ckan.redis.url if redis configuration

diff --git a/e2e/cypress/integration/000_harvest.cy.js b/e2e/cypress/integration/000_harvest.cy.js
@@ -14,7 +14,9 @@ describe('Harvest', { testIsolation: false }, () => {
         // Make sure organization does not exist before creating
         cy.delete_organization(harvestOrg);
         // Create the organization
-        cy.create_organization(harvestOrg, 'cypress harvest org description', false);
+        cy.visit('/organization');
+        cy.get('a[class="btn btn-primary"]').click();
+        cy.create_organization_ui(harvestOrg, 'cypress harvest org description');
     });
 
     after(() => {