v3.5.4

Main

• Improve graph_add_wind() memory use for large graphs by computing graph-scale wind speed directly in chunks instead of materializing detailed per-time-step wind output.
• Improve graph_create() memory use by releasing intermediate graph chunks while building the final graph vectors.
• Document and export tag_status() for companion packages.

Minor

• Deprecate edge_add_wind(return_averaged_variable); edge_add_wind() now always returns detailed edge/time/variable values.
• Deprecate graph_add_wind(variable); graph_add_wind() now always uses c("u", "v").
• Update GeoPressureViz wind handling to compute averaged edge wind from detailed edge_add_wind() output.
• Add example usage to mask_water() documentation.

Full Changelog: v3.5.3...v3.5.4

v3.5.3

Main

• Fix major issue with era5_dataset default set incorrectly to "both"
• Fix error in barometric equation
• Handle list stap0; preserve known_lat/lon

Minor

• Improve read_stap input handling and docs
• Improve geopressure_map() debugging by writing request bodies and full HTTP traces to temp log files.
• Improve geopressure_map() download failures error message.
• Strengthen era5_dataset documentation to warn that "both" is slower and can trigger memory failures on long stationary periods.
• Fix the .Rbuildignore trailing newline warning during package build.

Full Changelog: v3.5.2...v3.5.3

v3.5.2

Main

• Rename pitch to mean_acceleration_z
• Update GeoPressureR and GeoPressureManual URLs to geopressure.org and migrate repository links to GeoPressure/*
• • Improve geopressureviz design and interaction flow

Minor

• Move order of preslight
• Update branch name in codecov link
• Add pre-commit hook for codemeta synchronization
• Exclude .githooks from package build and refine AGENTS guidance

Full Changelog: v3.5.1...v3.5.2

v3.5.1

Tests and Coverage

• Add dedicated tests for tag_assert()
• Expand tag_label test coverage
• Add magnetic data test coverage
• Add BAS/light-file test and related tag_create fixes
• Exclude _add_wind helpers from coverage
• Coverage/test config updates and fixes, fix tests, misc cleanup
• Add shiny startup tests

Tag Creation / Tabular input

• Replace legacy dataframe/datapackage modes with unified tabular mode
• Remove obsolete tag_create_datapackage.R
• Validate crop range (crop_start < crop_end) and error when crop removes all data
• Fix temperature variable naming issue in tag creation flow

Minor

• Labeling / Quiet behavior: Fix missing quiet checks in labeling paths
• Remove experimental lifecycle badge from trainset

Full Changelog: v3.5.0...v3.5.1

v3.5.0

New functions related to light

• Add tag_stap_daily() to build stap from twilight midpoints and add read_stap() to validate/read stap files
• Add map_add_mask_water() for water masking and mask water pixels in plot.map() filtering
• Create geolight_fit_location(), refactor geolight mapping pipeline, and modularize geolight map flow
• Create twilight calibration plotting (plot_twl_calib)

Major Update

• Add era5_dataset parameter to geopressure map functions
• Fix missing variable parameter to graph_add_wind()
• Remove geosphere dependency and refactor distance/bearing computation
• Refactor geotiff downloads with future.apply + progressr

Trainset

• Major update of Trainset app
• Add experimental lifecycle badge to trainset
• Handle acceleration-only input (no pressure)
• Add modal checks/UI fixes, missing UI fix, and auto label_dir / auto-labeling fixes

GeoLightViz

• Add GeoLightViz app + modules
• Improve Shiny process handling so apps can co-exist and refactor app launcher utilities

GeoPressureViz

• Refactor GeoPressureViz map handling and map type/palette handling
• Refactor async pressure query logic
• Fix twilight grouping by stap in aggregation and fix zoom relayout triggering

Minor fixes

• Make stap filtering robust to missing columns
• Fix missing known lat/lon edge case
• Restrict merged path columns in pressurepath creation
• Move ecmwfr and ncdf4 to Suggests with runtime checks
• Use vapply and memory-focused cleanups, opt pass 1, opt pass 2
• Refine messaging / remove multiline cli text
• Switch formatting/lint workflow to air+jarl (follow-up fixes)
• • Refactor plot.tag() dispatch/modularity
• Refactor plot.map() args/path plotting
• Refactor plot_path() customization/static mode
• Improve plot_graph_movement() options and annotations / visual polish

v3.4.5

Main

• Add ability to not read a sensor file with file= ""
• Improve the computation of the decimal of stap_id during flight in find_stap()
• Remove bearing value of 0 when no movement and Normalize bearing to 0-360 degrees in path2edge
• Add twl_time_tolerance parameter to time series functions
• Improving tag_create: fix issue with multiple col and Simplify the approach avoiding memory error
• Switch from lintr+styler to air+jarl link

Minor fixes:

• Remove unused 'directory' argument from tag_create_dataframe
• Refactor trainset_read to use trainset_read_raw helper
• Remove timeout in pressurepath_create, geopressure_timeseries() and path2elevation()
• Add fix for migratech "invalid" keyword in file
• Fix issue when migratec deg file has no pressure
• Refine twilight threshold calculation logic
• Swap point colors in plot_tag_twilight function
• Refactor test setup to use temporary extdata directory
• Improve messaging 1 2, 3

GeoPressureViz:

• refactor prev/next flight message
• Make geopressureviz as background process
• Refactor to use shiny options instead of global varia…
• refine plotly icon
• GeoPressureViz--Add async support for pressure time series queries
• Fix layer order using mapPane

v3.4.4

What's Changed

• Refactored wind file path arguement to accept both stap_id and tag_id.[1] [2] [3] [4] [5] [6] [7] [8]

• Enhanced the print.graph and `print.tag [1] [2] [3]
  Improved CLI section headers to include the relevant id in several workflow functions, providing better context for the user. [1] [2] [3]

• Added an assert_tag parameter to `geopressuretemplate_config [1] [2] [3] [4]
  Added an assertion for scientific_name type early in bird_create to ensure input validity, and removed a redundant assertion later in the function. [1] [2]

• Updated progress messages and clarified output in several places. [1] [2]
  Improved handling of return values in error cases for geopressuretemplate_graph. [1] [2]
  Cleaned up and clarified documentation and comments, including removal of outdated references and minor formatting fixes. [1] [2]

• Fixed a logical error in plot_path_leaflet when checking the interp field.

• Ensured likelihood maps are retrieved and displayed more clearly in graph_create.

• Added a Year: 2022 field to the DESCRIPTION file.

Full Changelog: v3.4.3...v3.4.4

v3.4.3

Moderate

Memory Optimization on Graph Creation

• Replaced the use of geosphere functions with custom memory-efficient implementations for distance and bearing calculations.
• Improved graph creation by introducing distance filtering before distance calculation and adding progress messages for better user feedback.
• Added cleanup steps (rm and gc) in the edge_add_wind function to free memory by removing unused variables and closing netCDF files.

Minor

• Use an interp=1 by default in geopressureviz
• Temporally set default era5_dataset to land
• Removed redundant retry logic in httr2 requests across multiple functions (geopressure_map_mismatch, geopressure_timeseries) to simplify the code. (f227a90)

Full Changelog: v3.4.2...v3.4.3

v3.4.2

Moderate

• Normalization of forward/backward mapping in model to prevent underflow.
• Add actogram plot

Minor

• Fix of geopressuretemplate_pressurepath

Full Changelog: v3.4.1...v3.4.2

v3.4.1

Moderate

• Fixing error which inverted the variable accelerations and magnectic in SOI sensor

Minor

• Refactoring of light for futur developement of goelightviz()
• Add path_geopressureviz from csv to interim folder
• improvement in the computation efficiency of light2mat
• split tag_create by manufacturer

Full Changelog: v3.4.0...v3.4.1