Enhanced FedASDF indexing and waveform extraction (#268) #807

	# This workflow is setup by Fei Zhang to use Github Actions 2020-09-14
	# Updated by Melyn Roberts 2025 June to run tests using Anaconda3-2021.11 and Python and package versions designated in linux startup script

	name: hiperseis_main_ci

	on: [push]

	jobs:
	build:

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@main
	- uses: awalsh128/cache-apt-pkgs-action@latest
	with:
	packages: openmpi-bin libopenmpi-dev libhdf5-dev
	version: 1.0
	- name: Cache dependencies
	id: cache-dependencies
	uses: actions/cache@main
	with:
	path: \|
	/home/runner/work/hiperseis
	/usr/share/miniconda/envs/hiperseis
	key: anaconda
	- name: Setting up environment
	if: steps.cache-dependencies.outputs.cache-hit != 'true'
	run: \|
	wget -q https://repo.anaconda.com/archive/Anaconda3-2021.11-Linux-x86_64.sh -O anaconda.sh
	bash anaconda.sh -b -p $HOME/anaconda3 > /dev/null 2>&1
	export PATH="$HOME/anaconda3/bin:$PATH"
	conda init bash
	source ~/.bashrc
	- name: Install dependencies
	if: steps.cache-dependencies.outputs.cache-hit != 'true'
	run: \|
	git submodule update --init --recursive
	source setup_scripts/conda_env_linux.sh hiperseis
	- name: Running pytest
	run: \|
	eval "$(conda shell.bash hook)"
	conda init
	conda activate hiperseis
	coverage run -m pytest tests
	coverage xml
	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@main
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

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