Fix: Replace deprecated delim_whitespace with sep=r"\s+" for pandas >= 2.2#15
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Jah-yee wants to merge 1 commit intoGfellerLab:masterfrom
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Fix: Replace deprecated delim_whitespace with sep=r"\s+" for pandas >= 2.2#15Jah-yee wants to merge 1 commit intoGfellerLab:masterfrom
Jah-yee wants to merge 1 commit intoGfellerLab:masterfrom
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…= 2.2 pandas >= 2.2 removed the delim_whitespace keyword argument from pd.read_csv(), causing a TypeError crash before any predictions can be made. This replaces delim_whitespace=True with sep=r'\s+' which provides equivalent whitespace delimiting behavior. Fixes GfellerLab#14
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What
pandas >= 2.2 removed the
delim_whitespacekeyword argument frompd.read_csv(), causing aTypeErrorcrash before any predictions can be made.Fix
Replace
delim_whitespace=Truewithsep=r"\s+"which provides equivalent whitespace delimiting behavior.Files changed
code/main.pyline 210code/main_sequences.pyline 261code/MixMHCpred.pyline 190Testing
Tested locally with pandas 2.3.3 (the version mentioned in the issue).
Fixes #14