Skip to content

Conversation

@hyper-param
Copy link
Contributor

REQUIRED: Add a summary of your PR here, typically including why the change is needed and what was changed. Include any design alternatives for discussion purposes.


--- YOUR PR SUMMARY GOES HERE ---


REQUIRED: Fill out the below checklists or remove if irrelevan

  1. If you are opening a PR for Community Notebooks under the notebooks/community folder:
  • This notebook has been added to the CODEOWNERS file under the Community Notebooks section, pointing to the author or the author's team.
  • Passes all the required formatting and linting checks. You can locally test with these instructions.

@gemini-code-assist
Copy link
Contributor

Summary of Changes

Hello @hyper-param, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request resolves a JSON response parsing error by updating a core dependency and streamlining the configuration of the HTTP DNA client within the quickstart notebook. These changes ensure the notebook leverages the most current alphagenome package and correctly initializes the client, which should lead to more reliable data processing and prevent previous parsing failures.

Highlights

  • Dependency Update: The alphagenome wheel package version has been updated from 0.4.2.3 to 0.4.2.5 in the quickstart notebook, ensuring the use of the latest compatible library.
  • API Client Configuration: The model_version parameter, specifically set to "FOLD_0", has been removed from the dna_client_http.create_http_client call, simplifying the client initialization and potentially resolving parsing issues.
Using Gemini Code Assist

The full guide for Gemini Code Assist can be found on our documentation page, here are some quick tips.

Invoking Gemini

You can request assistance from Gemini at any point by creating a comment using either /gemini <command> or @gemini-code-assist <command>. Below is a summary of the supported commands on the current page.

Feature Command Description
Code Review /gemini review Performs a code review for the current pull request in its current state.
Pull Request Summary /gemini summary Provides a summary of the current pull request in its current state.
Comment @gemini-code-assist Responds in comments when explicitly tagged, both in pull request comments and review comments.
Help /gemini help Displays a list of available commands.

Customization

To customize Gemini Code Assist for GitHub experience, repository maintainers can create a configuration file and/or provide a custom code review style guide (such as PEP-8 for Python) by creating and adding files to a .gemini/ folder in the base of the repository. Detailed instructions can be found here.

Limitations & Feedback

Gemini Code Assist may make mistakes. Please leave feedback on any instances where its feedback is incorrect or counter productive. You can react with 👍 and 👎 on @gemini-code-assist comments. If you're interested in giving your feedback about your experience with Gemini Code Assist for Github and other Google products, sign up here.

You can also get AI-powered code generation, chat, as well as code reviews directly in the IDE at no cost with the Gemini Code Assist IDE Extension.

Footnotes

  1. Review the Privacy Notices, Generative AI Prohibited Use Policy, Terms of Service, and learn how to configure Gemini Code Assist in GitHub here. Gemini can make mistakes, so double check it and use code with caution.

Copy link
Contributor

@gemini-code-assist gemini-code-assist bot left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Code Review

This pull request updates the alphagenome wheel file version and removes the model_version parameter from the create_http_client call, which is stated to fix a JSON response parsing error. The changes are minimal and appear to address the stated issue.

"print(\"Creating HttpDnaClient...\")\n",
"dna_model = dna_client_http.create_http_client(\n",
" vertex_ai_url=vertex_ai_url,\n",
" model_version=\"FOLD_0\",\n",
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

medium

The removal of model_version="FOLD_0" seems to address the 'json response parsing error' mentioned in the PR title. Could you add a brief comment explaining why this parameter was removed? For example, if FOLD_0 is no longer a valid version, or if the parameter itself is deprecated/no longer expected by the API. This would improve code clarity for future maintainers.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant