HNL DIS from spline (core implementation) by austinschneider · Pull Request #108 · Harvard-Neutrino/SIREN

austinschneider · 2026-04-28T04:29:06Z

Stack: PR 10 of 14

This PR is part of a 14-PR stack decomposing dev/HNL_DIS into reviewable chunks.

Base: fix/darknews-modelcontainer
Head: feat/hnl-dis-from-spline

Merge order: fix/darknews-modelcontainer should land before this PR.

Squashed contents

Squashed diff for paths:

projects/interactions/private/DISFromSpline.cxx
projects/interactions/private/HNLDISFromSpline.cxx
projects/interactions/private/HNLDipoleDISFromSpline.cxx
projects/interactions/public/SIREN/interactions/DISFromSpline.h
projects/interactions/public/SIREN/interactions/HNLDISFromSpline.h
projects/interactions/public/SIREN/interactions/HNLDipoleDISFromSpline.h
projects/interactions/private/pybindings/HNLDISFromSpline.h
projects/interactions/private/pybindings/HNLDipoleDISFromSpline.h
projects/interactions/private/pybindings/HNLFromSpline.h
projects/interactions/private/pybindings/DipoleFromTable.h
projects/interactions/private/pybindings/NeutrissimoDecay.h
projects/interactions/private/pybindings/InteractionCollection.h
projects/interactions/private/test/DipoleFromTable_TEST.cxx
projects/interactions/private/HNLDipoleFromTable.cxx
projects/interactions/public/SIREN/interactions/HNLDipoleFromTable.h
projects/interactions/private/pybindings/HNLDipoleFromTable.h
projects/interactions/CMakeLists.txt
projects/interactions/public/SIREN/interactions.h
projects/interactions/public/SIREN/interactions/serializable.h
projects/interactions/private/DipoleFromTable.cxx
projects/interactions/private/HNLFromSpline.cxx
projects/interactions/private/NeutrissimoDecay.cxx
projects/interactions/public/SIREN/interactions/DipoleFromTable.h
projects/interactions/public/SIREN/interactions/HNLFromSpline.h
projects/interactions/public/SIREN/interactions/NeutrissimoDecay.h

Source commits on dev/HNL_DIS_clean that contributed:
197bf14 (Nicholas Kamp): fixing build errors from the merge
1d64c7f (Nicholas Kamp): change the units handling of the HNL classes
1d68f30 (Nicholas Kamp): fix runtime errors on HNL generation related to particle types
3625e81 (Nicholas Kamp): fix build errors, add 3 nu decay
5031575 (Nicholas Kamp): initial suite of changes to re-implement the dipole DIS from spline class in the SIREN parlance
521695f (Nicholas Kamp): fix issues with 2D tabular integral calculation, sampling errors with very short decay lengths, DarkNews errors, and kinematic erros in Dipole portal HNL DIS
96f16cc (Nicholas Kamp): build fixes, total decay width fixes
a79d440 (Nicholas Kamp): getting HNLs to work for SINE and UNDINE
a82c9be (Nicholas Kamp): include an explicit W^2 kinematic bound in DIS xs class
b6eba95 (Nicholas Kamp): total decay width for EW decay
da5f6b2 (Nicholas Kamp): detector changes, functionality to save initial position of interaction_record, and fix to HNLDISFromSpline.cxx
ea13b30 (nickkamp1): Rename some classes, flush out the two body decay class
edb1597 (Nicholas Kamp): many changes in DIS implementation + albrecht's lake geneva detector
f0d6dd2 (Nicholas Kamp): build fixes
f81957e (Nicholas Kamp): fix kinematic issues in DIS, including rounding errors

Notes

This branch is the squashed cumulative diff of the listed source commits. Per-commit history is browsable on dev/HNL_DIS_clean.
Large .fits data files have been removed from the branch and are packaged separately.

Squashed diff for paths: - projects/interactions/private/DISFromSpline.cxx - projects/interactions/private/HNLDISFromSpline.cxx - projects/interactions/private/HNLDipoleDISFromSpline.cxx - projects/interactions/public/SIREN/interactions/DISFromSpline.h - projects/interactions/public/SIREN/interactions/HNLDISFromSpline.h - projects/interactions/public/SIREN/interactions/HNLDipoleDISFromSpline.h - projects/interactions/private/pybindings/HNLDISFromSpline.h - projects/interactions/private/pybindings/HNLDipoleDISFromSpline.h - projects/interactions/private/pybindings/HNLFromSpline.h - projects/interactions/private/pybindings/DipoleFromTable.h - projects/interactions/private/pybindings/NeutrissimoDecay.h - projects/interactions/private/pybindings/InteractionCollection.h - projects/interactions/private/test/DipoleFromTable_TEST.cxx - projects/interactions/private/HNLDipoleFromTable.cxx - projects/interactions/public/SIREN/interactions/HNLDipoleFromTable.h - projects/interactions/private/pybindings/HNLDipoleFromTable.h - projects/interactions/CMakeLists.txt - projects/interactions/public/SIREN/interactions.h - projects/interactions/public/SIREN/interactions/serializable.h - projects/interactions/private/DipoleFromTable.cxx - projects/interactions/private/HNLFromSpline.cxx - projects/interactions/private/NeutrissimoDecay.cxx - projects/interactions/public/SIREN/interactions/DipoleFromTable.h - projects/interactions/public/SIREN/interactions/HNLFromSpline.h - projects/interactions/public/SIREN/interactions/NeutrissimoDecay.h Source commits on dev/HNL_DIS_clean that contributed: 197bf14 (Nicholas Kamp): fixing build errors from the merge 1d64c7f (Nicholas Kamp): change the units handling of the HNL classes 1d68f30 (Nicholas Kamp): fix runtime errors on HNL generation related to particle types 3625e81 (Nicholas Kamp): fix build errors, add 3 nu decay 5031575 (Nicholas Kamp): initial suite of changes to re-implement the dipole DIS from spline class in the SIREN parlance 521695f (Nicholas Kamp): fix issues with 2D tabular integral calculation, sampling errors with very short decay lengths, DarkNews errors, and kinematic erros in Dipole portal HNL DIS 96f16cc (Nicholas Kamp): build fixes, total decay width fixes a79d440 (Nicholas Kamp): getting HNLs to work for SINE and UNDINE a82c9be (Nicholas Kamp): include an explicit W^2 kinematic bound in DIS xs class b6eba95 (Nicholas Kamp): total decay width for EW decay da5f6b2 (Nicholas Kamp): detector changes, functionality to save initial position of interaction_record, and fix to HNLDISFromSpline.cxx ea13b30 (nickkamp1): Rename some classes, flush out the two body decay class edb1597 (Nicholas Kamp): many changes in DIS implementation + albrecht's lake geneva detector f0d6dd2 (Nicholas Kamp): build fixes f81957e (Nicholas Kamp): fix kinematic issues in DIS, including rounding errors Co-authored-by: nickkamp1 <nwkamp@mit.edu>

Copilot

Pull request overview

Note

Copilot was unable to run its full agentic suite in this review.

Implements core HNL DIS cross sections backed by spline tables (plus dipole-DIS variant), updates public interaction exports/serialization, and adjusts the build + Python bindings to expose the new HNL interaction types.

Changes:

Replaces legacy HNL/Dipole table/spline classes with HNLDISFromSpline, HNLDipoleDISFromSpline, and HNLDipoleFromTable APIs.
Adds DIS kinematic bound handling (W^2 floor) and numerical-robustness tweaks in DIS sampling.
Updates CMake and pybind11 bindings to build/link and expose the new interaction implementations.

Reviewed changes

Copilot reviewed 21 out of 21 changed files in this pull request and generated 12 comments.

Show a summary per file

File	Description
projects/interactions/public/SIREN/interactions/serializable.h	Updates serialization include set to new HNL interaction classes.
projects/interactions/public/SIREN/interactions/HNLFromSpline.h	Refactors/renames HNL spline cross section class API to `HNLDISFromSpline`.
projects/interactions/private/HNLFromSpline.cxx	Updates implementation to `HNLDISFromSpline`, adds mixing normalization + thresholding.
projects/interactions/public/SIREN/interactions/HNLDipoleDISFromSpline.h	Introduces new dipole DIS-from-spline cross section interface + cereal hooks.
projects/interactions/private/HNLDipoleDISFromSpline.cxx	Implements dipole DIS-from-spline sampling/evaluation and unit scaling.
projects/interactions/public/SIREN/interactions/DipoleFromTable.h	Renames dipole-from-table class to `HNLDipoleFromTable` + cereal hooks.
projects/interactions/private/DipoleFromTable.cxx	Updates implementation names to match `HNLDipoleFromTable`.
projects/interactions/public/SIREN/interactions/DISFromSpline.h	Adds `minimum_W2_` and new W² bound helper declaration.
projects/interactions/private/DISFromSpline.cxx	Enforces W² floor and adds rounding-error guards in sampling.
projects/interactions/public/SIREN/interactions.h	Exports new HNL interaction headers in umbrella include.
projects/interactions/private/pybindings/HNLDISFromSpline.h	Adds pybind11 bindings for `HNLDISFromSpline`.
projects/interactions/private/pybindings/HNLDipoleDISFromSpline.h	Adds pybind11 bindings for `HNLDipoleDISFromSpline`.
projects/interactions/private/pybindings/HNLDipoleFromTable.h	Adds pybind11 bindings for `HNLDipoleFromTable`.
projects/interactions/private/pybindings/InteractionCollection.h	Exposes `InteractionCollection::GetPrimaryType()` to Python.
projects/interactions/private/test/DipoleFromTable_TEST.cxx	Updates unit test to use renamed `HNLDipoleFromTable`.
projects/interactions/CMakeLists.txt	Switches sources to new files and adds GSL/crundec linkage.

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Copilot · 2026-04-28T04:37:27Z

+    ${PROJECT_SOURCE_DIR}/projects/interactions/private/HNLDipoleFromTable.cxx
+    ${PROJECT_SOURCE_DIR}/projects/interactions/private/HNLDISFromSpline.cxx


CMake now references HNLDipoleFromTable.cxx and HNLDISFromSpline.cxx, but the diffs show changes applied to private/DipoleFromTable.cxx and private/HNLFromSpline.cxx (no file rename in the presented diff). This will break the build unless the files are actually renamed in the PR. Either rename the source files to match the new CMake entries, or update CMake to point at the existing filenames.

Suggested change

${PROJECT_SOURCE_DIR}/projects/interactions/private/HNLDipoleFromTable.cxx

${PROJECT_SOURCE_DIR}/projects/interactions/private/HNLDISFromSpline.cxx

${PROJECT_SOURCE_DIR}/projects/interactions/private/DipoleFromTable.cxx

${PROJECT_SOURCE_DIR}/projects/interactions/private/HNLFromSpline.cxx

Copilot · 2026-04-28T04:37:27Z

+#include "SIREN/interactions/HNLDipoleFromTable.h"
+#include "SIREN/interactions/HNLDipoleDISFromSpline.h"
+#include "SIREN/interactions/HNLDISFromSpline.h"


Public headers now include HNLDipoleFromTable.h / HNLDISFromSpline.h, but the corresponding diffs show the updated class definitions living in DipoleFromTable.h and HNLFromSpline.h (again, no rename shown). This mismatch will cause include failures for consumers. Ensure the header files are renamed to match the new include paths, or update these includes back to the actual filenames.

Suggested change

#include "SIREN/interactions/HNLDipoleFromTable.h"

#include "SIREN/interactions/HNLDipoleDISFromSpline.h"

#include "SIREN/interactions/HNLDISFromSpline.h"

#include "SIREN/interactions/DipoleFromTable.h"

#include "SIREN/interactions/HNLDipoleDISFromSpline.h"

#include "SIREN/interactions/HNLFromSpline.h"

Copilot · 2026-04-28T04:37:28Z

+    double TotalCrossSection(dataclasses::InteractionRecord const &) const override;
+    double TotalCrossSection(siren::dataclasses::Particle::ParticleType primary_type, double energy) const;
+    double DifferentialCrossSection(dataclasses::InteractionRecord const &) const override;
+    double DifferentialCrossSection(siren::dataclasses::Particle::ParticleType primary_type, double energy, double x, double y, double Q2=std::numeric_limits<double>::quiet_NaN()) const;


std::numeric_limits is used but <limits> is not included in this header. Add the missing include to avoid compilation errors.

Copilot · 2026-04-28T04:37:28Z

+        std::cout << "WARNING: DIS sampling resulted in an x component of the momentum transfer larger than the total momentum transfer by ";
+        std::cout << ((pqx_lab-momq_lab)/momq_lab)*100 << "%" << std::endl;
+        std::cout << "Setting y component to zero" << std::endl;


std::cout / std::endl are used but <iostream> is not included in this translation unit. Add #include <iostream> to prevent build failures.

Copilot · 2026-04-28T04:37:28Z

+void DISFromSpline::SetMinimiumW2() {
+    if (target_mass_ <=0) {
+        std::cerr << "Trying to set minimum W2 with non positive target mass\n";
+        exit(0);
+    }


Calling exit(0) inside a library component will terminate the entire process and is difficult to handle operationally (especially from Python bindings). Replace this with an exception (e.g., std::runtime_error) or an assertion, and include any needed headers (<stdexcept> / <cstdlib> / <iostream>) accordingly.

Copilot · 2026-04-28T04:37:29Z

+        .def(init<std::vector<char>, std::vector<char>, double, std::vector<double>, double, double, std::set<siren::dataclasses::ParticleType>, std::set<siren::dataclasses::ParticleType>, std::string>(),
+                arg("total_xs_data"),
+                arg("differential_xs_data"),


Same issue as HNLDISFromSpline: the arg(...) names imply (total, differential) ordering, but the underlying C++ constructors are declared as (differential, total). Even if binding still compiles, it creates a sharp edge for Python users; align the argument names (and/or the bound constructor order) with the actual C++ signature.

Copilot · 2026-04-28T04:37:29Z

+    std::set<siren::dataclasses::Particle::ParticleType> primary_types_;
+    std::set<siren::dataclasses::Particle::ParticleType> target_types_;


The member sets use siren::dataclasses::Particle::ParticleType while constructors accept std::set<siren::dataclasses::ParticleType>. Unless these are exact typedefs of one another, this is a type mismatch that will not compile cleanly and also creates an inconsistent public API. Standardize on a single ParticleType type for parameters and members (preferably consistently across all interaction classes).

Copilot · 2026-04-28T04:37:29Z

+    HNLDipoleDISFromSpline(std::vector<char> differential_data, std::vector<char> total_data, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::set<siren::dataclasses::ParticleType> primary_types, std::set<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");
+    HNLDipoleDISFromSpline(std::vector<char> differential_data, std::vector<char> total_data, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::vector<siren::dataclasses::ParticleType> primary_types, std::vector<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");
+    HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::set<siren::dataclasses::ParticleType> primary_types, std::set<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");
+    HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, std::set<siren::dataclasses::ParticleType> primary_types, std::set<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");
+    HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::vector<siren::dataclasses::ParticleType> primary_types, std::vector<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");
+    HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, std::vector<siren::dataclasses::ParticleType> primary_types, std::vector<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");


The member sets use siren::dataclasses::Particle::ParticleType while constructors accept std::set<siren::dataclasses::ParticleType>. Unless these are exact typedefs of one another, this is a type mismatch that will not compile cleanly and also creates an inconsistent public API. Standardize on a single ParticleType type for parameters and members (preferably consistently across all interaction classes).

Suggested change

HNLDipoleDISFromSpline(std::vector<char> differential_data, std::vector<char> total_data, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::set<siren::dataclasses::ParticleType> primary_types, std::set<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::vector<char> differential_data, std::vector<char> total_data, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::vector<siren::dataclasses::ParticleType> primary_types, std::vector<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::set<siren::dataclasses::ParticleType> primary_types, std::set<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, std::set<siren::dataclasses::ParticleType> primary_types, std::set<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::vector<siren::dataclasses::ParticleType> primary_types, std::vector<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, std::vector<siren::dataclasses::ParticleType> primary_types, std::vector<siren::dataclasses::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::vector<char> differential_data, std::vector<char> total_data, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::set<siren::dataclasses::Particle::ParticleType> primary_types, std::set<siren::dataclasses::Particle::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::vector<char> differential_data, std::vector<char> total_data, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::vector<siren::dataclasses::Particle::ParticleType> primary_types, std::vector<siren::dataclasses::Particle::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::set<siren::dataclasses::Particle::ParticleType> primary_types, std::set<siren::dataclasses::Particle::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, std::set<siren::dataclasses::Particle::ParticleType> primary_types, std::set<siren::dataclasses::Particle::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, double target_mass, double minumum_Q2, std::vector<siren::dataclasses::Particle::ParticleType> primary_types, std::vector<siren::dataclasses::Particle::ParticleType> target_types, std::string units = "invGeV");

HNLDipoleDISFromSpline(std::string differential_filename, std::string total_filename, double hnl_mass, std::vector<double> dipole_coupling, std::vector<siren::dataclasses::Particle::ParticleType> primary_types, std::vector<siren::dataclasses::Particle::ParticleType> target_types, std::string units = "invGeV");

Copilot · 2026-04-28T04:37:29Z

+    std::map<std::pair<siren::dataclasses::Particle::ParticleType, siren::dataclasses::Particle::ParticleType>, std::vector<dataclasses::InteractionSignature>> signatures_by_parent_types_;
+
+
+    double unit;


Same uninitialized-state issue as HNLDISFromSpline: unit is not initialized and the default constructor exists. Initialize unit in-class or in the default constructor to avoid UB if the object is used before calling SetUnits().

Suggested change

double unit;

double unit = 1.0;

Copilot · 2026-04-28T04:37:30Z

+    double W2 = pow(target_mass_, 2) + Q2/x * (1-x); // calculate invariant hardonic mass
+    if (W2 < minimum_W2_) // cross section not calculated, assumed to be zero
+        return 0;


This PR introduces a new kinematic cut (W2 < minimum_W2_ returns 0) that changes the DIS cross-section behavior. Consider adding/adjusting unit tests to cover: (a) DifferentialCrossSection returns 0 below the W² floor, and (b) sampling respects the same W² constraint, to prevent regressions.

austinschneider · 2026-04-28T15:32:14Z

Closing to reopen from the commit author's account so they can be added as a reviewer. Branch unchanged; will be re-linked from the new PR shortly.

Copilot AI review requested due to automatic review settings April 28, 2026 04:29

austinschneider force-pushed the fix/darknews-modelcontainer branch from 0389ba5 to de7e5b1 Compare April 28, 2026 04:34

austinschneider force-pushed the feat/hnl-dis-from-spline branch from 2594915 to 7c3628d Compare April 28, 2026 04:34

Copilot AI reviewed Apr 28, 2026

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austinschneider force-pushed the fix/darknews-modelcontainer branch from de7e5b1 to 7ad4c57 Compare April 28, 2026 05:09

austinschneider force-pushed the feat/hnl-dis-from-spline branch from 7c3628d to 497a4bf Compare April 28, 2026 05:09

austinschneider force-pushed the fix/darknews-modelcontainer branch from 7ad4c57 to 7b61952 Compare April 28, 2026 06:04

austinschneider force-pushed the feat/hnl-dis-from-spline branch from 497a4bf to dffa635 Compare April 28, 2026 06:04

austinschneider mentioned this pull request Apr 28, 2026

HNL 2-body decays #109

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austinschneider force-pushed the fix/darknews-modelcontainer branch from 7b61952 to d107b83 Compare April 28, 2026 13:26

austinschneider force-pushed the feat/hnl-dis-from-spline branch 2 times, most recently from ed52cca to 539374b Compare April 28, 2026 14:36

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HNL DIS from spline (core implementation)#108

HNL DIS from spline (core implementation)#108
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		${PROJECT_SOURCE_DIR}/projects/interactions/private/HNLDipoleFromTable.cxx
		${PROJECT_SOURCE_DIR}/projects/interactions/private/HNLDISFromSpline.cxx

		std::set<siren::dataclasses::Particle::ParticleType> primary_types_;
		std::set<siren::dataclasses::Particle::ParticleType> target_types_;

		std::map<std::pair<siren::dataclasses::Particle::ParticleType, siren::dataclasses::Particle::ParticleType>, std::vector<dataclasses::InteractionSignature>> signatures_by_parent_types_;


		double unit;

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austinschneider commented Apr 28, 2026

Stack: PR 10 of 14

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