Repository for our study to observe genome differences in highly related E. coli strains and how that related to genome assembly
Contains 95 total E. coli assemblies along a coverage increment using the IDBA (Peng et al., 2012) and SPAdes (Bankevich et al., 2012) assemblers
All graphs and correlations are based on statistics from IDBA assemblies, rather than the in-text graphs based on SPAdes
This file contains the metadata of all of the raw sequencing data used in this study. The 34 strains selected to assemble over a coveage increment are SRR Numbers SRR3989774-SRR3989808, exculding SRR3989775 (Which is a Mus musculus sample)
The script used to download, subset and assemble sequencing data, and analyze and annotate the assemblies