Added collection site

HumanCellAtlas · Feb 11, 2025 · 1e4fa22 · 1e4fa22
1 parent 256e587
commit 1e4fa22
Show file tree

Hide file tree

Showing 3 changed files with 9 additions and 0 deletions.
diff --git a/docs/jsonBrowser/type.md b/docs/jsonBrowser/type.md
@@ -355,6 +355,7 @@ adjacent_diseases | Short description of the disease(s) adjacent to the specimen
 state_of_specimen | State of the specimen at the time of collection. | object | no | [See module  state_of_specimen](module.md#state-of-specimen) | State of specimen |  | 
 preservation_storage | Information about how a specimen was preserved and/or stored over a period of time. | object | no | [See module  preservation_storage](module.md#preservation-storage) | Preservation/Storage |  | 
 collection_time | When the biomaterial was collected. | string | no |  | Time of collection |  | 2016-01-21T00:00:00Z; 2016-03
+collection_site | Where the biomaterial was collected on. | string | no |  | Collection site |  | 52.175013, 0.141645; site_1; Addenbrooke's Hospital
 purchased_specimen | Information about a purchased specimen. | object | no | [See module  purchased_reagents](module.md#purchased-reagents) | Purchased specimen |  | 
 
 ## Cell suspension

diff --git a/json_schema/type/biomaterial/specimen_from_organism.json b/json_schema/type/biomaterial/specimen_from_organism.json
@@ -117,6 +117,13 @@
                  }
               ]
         },
+        "collection_site": {
+            "description": "Where the biomaterial was collected on.",
+            "type": "string", 
+            "user_friendly": "Collection site", 
+            "example": "52.175013, 0.141645; site_1; Addenbrooke's Hospital",
+            "guidelines": "Enter collection site latitude longitude in deciman degrees. If decimal degrees not available use site name or pseudonymised site name."
+        },
         "purchased_specimen": {
             "description": "Information about a purchased specimen.",
             "type": "object",

diff --git a/json_schema/update_log.csv b/json_schema/update_log.csv
@@ -1 +1,2 @@
 Schema,Change type,Change message,Version,Date
+type/biomaterial/specimen_from_organism.json,minor,"Added collection site in specimen_from_organism.Issue1606",,
Original file line number	Diff line number	Diff line change
		@@ -1 +1,2 @@
		Schema,Change type,Change message,Version,Date
		type/biomaterial/specimen_from_organism.json,minor,"Added collection site in specimen_from_organism.Issue1606",,