Merge pull request #1548 from HumanCellAtlas/ac-organ-donor-Issue1547

Added transplant_organ field in specimen_from_organism. Fixes #1547
HumanCellAtlas · Mar 22, 2024 · b119b1a · b119b1a
2 parents 75506c6 + 34dd920
commit b119b1a
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Showing 4 changed files with 15 additions and 2 deletions.
diff --git a/changelog.md b/changelog.md
@@ -6,6 +6,11 @@ Starting after v5.0.0 release, updates will be declared for schemas independentl
 and (starting with v4.0.0) this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html). Unreleased changes may be indicated under the `Unreleased` heading.
 
 ## [Unreleased](https://github.com/HumanCellAtlas/metadata-schema/tree/staging)
+
+### [type/biomaterial/specimen_from_organism.json - v10.9.0] - 2024-03-22
+### Added
+Added transplant_organ field in specimen_from_organism Fixes#1547"
+
 ## [Released](https://github.com/HumanCellAtlas/metadata-schema/)
 
 ### [type/project/project.json - v19.0.0] - 2024-03-15

diff --git a/docs/jsonBrowser/type.md b/docs/jsonBrowser/type.md
@@ -343,6 +343,7 @@ biomaterial_core | Core biomaterial-level information. | object | yes | [See cor
 genus_species | The scientific binomial name for the species of the specimen. | array | no | [See module  species_ontology](module.md#species-ontology) | Genus species |  | 
 organ | The organ that the biomaterial came from. | object | yes | [See module  organ_ontology](module.md#organ-ontology) | Organ |  | 
 organ_parts | A term for a specific part of the organ that the biomaterial came from. | array | no | [See module  organ_part_ontology](module.md#organ-part-ontology) | Organ part |  | 
+transplant_organ | Was the specimen collected after extraction for organ transplantation? | boolean | no |  | Transplant organ |  | yes; no
 diseases | Short description of known disease(s) of the specimen. | array | no | [See module  disease_ontology](module.md#disease-ontology) | Known disease(s) |  | 
 adjacent_diseases | Short description of the disease(s) adjacent to the specimen's collection site (e.g. breast cancer). | array | no | [See module  disease_ontology](module.md#disease-ontology) | Adjacent disease(s) |  | 
 state_of_specimen | State of the specimen at the time of collection. | object | no | [See module  state_of_specimen](module.md#state-of-specimen) | State of specimen |  | 

diff --git a/json_schema/type/biomaterial/specimen_from_organism.json b/json_schema/type/biomaterial/specimen_from_organism.json
@@ -65,6 +65,13 @@
             "guidelines": "The term organ part is very broadly defined here.",
             "user_friendly": "Organ part"
         },
+        "transplant_organ": {
+            "description": "Was the specimen collected after extraction for organ transplantation?",
+            "type": "boolean",
+            "user_friendly": "Transplant organ",
+            "guidelines": "Should be one of: yes, or no.",
+            "example": "yes; no"
+        },
         "diseases": {
             "description": "Short description of known disease(s) of the specimen.",
             "type": "array",

diff --git a/json_schema/versions.json b/json_schema/versions.json
@@ -1,5 +1,5 @@
 {
-    "last_update_date": "2024-03-15T11:43:55Z",
+    "last_update_date": "2024-03-22T11:00:33Z",
     "version_numbers": {
         "core": {
             "biomaterial": {
@@ -94,7 +94,7 @@
                 "donor_organism": "16.0.0",
                 "imaged_specimen": "3.5.0",
                 "organoid": "11.5.0",
-                "specimen_from_organism": "10.8.0"
+                "specimen_from_organism": "10.9.0"
             },
             "file": {
                 "analysis_file": "7.0.0",