Added ontology updates in docs & update_log.csv

HumanCellAtlas · Jan 27, 2025 · cb5adf6 · cb5adf6
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diff --git a/docs/jsonBrowser/module.md b/docs/jsonBrowser/module.md
@@ -232,8 +232,8 @@ Location: module/ontology/medication_ontology.json
 
 Property name | Description | Type | Required? | Object reference? | User friendly name | Allowed values | Example 
 --- | --- | --- | --- | --- | --- | --- | --- 
-text | Medication(s) the individual was taking at time of biomaterial collection. | string | yes |  | Medication |  | bisoprolol; paracetamol; loratadine
-ontology | An ontology term identifier in the form prefix:accession. | string | no |  | Medication ontology ID |  | CHEBI:3127; CHEBI:46195; CHEBI:6538
+text | Medication(s) the individual was taking at time of biomaterial collection. | string | yes |  | Medication |  | Ibuprofen Lysine; Bisoprolol; salbutamol suspension
+ontology | An ontology term identifier in the form prefix:accession. | string | no |  | Medication ontology ID |  | NCIT:C72809; NCIT:C61653; DRON:00001511
 ontology_label | The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. | string | no |  | Medication ontology label |  | bisoprolol; paracetamol; loratadine
 
 ## File format ontology<a name='File format ontology'></a>

diff --git a/docs/jsonBrowser/required_fields.md b/docs/jsonBrowser/required_fields.md
@@ -287,7 +287,7 @@ text | The name of the strain to which the organism belongs. | string |  | Strai
 ### Medication ontology<a name='Medication ontology'></a>
 Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example 
 --- | --- | --- | --- | --- | --- | --- 
-text | Medication(s) the individual was taking at time of biomaterial collection. | string |  | Medication |  | bisoprolol; paracetamol; loratadine
+text | Medication(s) the individual was taking at time of biomaterial collection. | string |  | Medication |  | Ibuprofen Lysine; Bisoprolol; salbutamol suspension
 ### File format ontology<a name='File format ontology'></a>
 Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example 
 --- | --- | --- | --- | --- | --- | --- 

diff --git a/json_schema/module/ontology/medication_ontology.json b/json_schema/module/ontology/medication_ontology.json
@@ -43,7 +43,7 @@
             "description": "The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field.",
             "type": "string",
             "user_friendly": "Medication ontology label",
-            "example": "bisoprolol; paracetamol; loratadine"
+            "example": "Ibuprofen Lysine; Bisoprolol; salbutamol suspension"
         }
     }
 }
diff --git a/json_schema/update_log.csv b/json_schema/update_log.csv
@@ -1 +1,2 @@
 Schema,Change type,Change message,Version,Date
+module/ontology/medication_ontology,major,Changed ontology source for the medication_ontology,,
Original file line number	Diff line number	Diff line change
		@@ -1 +1,2 @@
		Schema,Change type,Change message,Version,Date
		module/ontology/medication_ontology,major,Changed ontology source for the medication_ontology,,