Release 26.0.2

• More scipion-em-xmipp
  • Remove scipion dependencies from requirements

Release 26.0.1

• More scipion-em-xmipp
  • Fix on xmipp installation flag

Release 26.0.0

• Protocols updated

  • deep_micrograph_screen: updated enviroment to tensorFlow2 and models updated to
  • movie_max_shif: Change the criteria to evaluate the shift
  • crop_resize: Crop/Resize half maps too, if they are available
  • resolution3D: The FSC can be computed now using the two halves
  • align_volume_and_particles: Allow considering mirrors in align volume and particles

• More scipion-em-xmipp

  • Disable xmippDep by default (the dependencies will not be installed by default in the Scipion environment), but installing just the libstdcxx dependence
  • Script to generate the protocols map (https://i2pc.github.io/docs/protocolsMap.html#)
  • Remove Relion dependency from TestXmippDenoiseParticles
  • parse json to report summary installation errors
  • View all classes added for XmippProtConsensusClasses

3.25.06.1 - Rhea

• Disabling the default installation of dependencies to prevent breaking the scipion environment

3.25.06.0 - Rhea

• New protocols

  • compute_likelihood: This protocol computes the likelihood of a set of particles with assigned angles when compared to a set of maps or atomic modelS

• Protocols updated

  • Max shift: tolerate movies without micrographs associated
  • substract_projection: update command to boost and subtract to generate only one output stack
  • Movie alignment consensus protocol: enables irregular input sets. Changes in functionality; comparisons between ons between shifts trajectories, and a additional change related to the minimum consensus or threshold for shifts correlation.
  • volume_adjust_sub: better label for volume 1 vs 2
  • convert_pdb: aDD binThreads
  • align_volume: add possible
  • particle_pick_consensus: Fixed ID mismatch when combining coordinate sets; now supports asymmetrical sets without indexing errors.
  • movie_split_frames: now allows testing sum_frames, includes a summary, improved layout, and updated test.
  • deep_Consensus: GPU handling
  • Deep_hand: handling env to avoid system CUDA settings, erasing cuda things from env['LD_LIBRARY_PATH']
  • Extract particles protocol: force output boxsize
  • reconstruct_fourier: correctEnvelope False by default
  • reconstruct_highres: test updated, correctEnvelope False by default
  • Structure map: Adding a dendrogram and removing some intermediate files

• Protocols fixed

  • simulate ctf: fix pre-CTF noise np.numpy, init generator for pre and post ctf noise
  • validate FSCQ: test fixed
  • resolution_monogenic_signal: fixing header in MonoRes
  • protocol_process: CropResize halves fix
  • Extract particles test fixed
  • FSO viewer: the fso was failing when the fso did not cross some thresholds
  • reconstruct_significant: fix gpu usage
  • ransac: fix gpu usage

• Protocols deprecated (For more details visit this)

  • XmippProtScreenDeepLearning

• More scipion-em-xmipp

  • Most of the Xmipp dependencies installed on Scipion env
  • Updating version for pypi requirements
  • Bug cloning tag
  • Use toml for installation
  • Bug fixed related to the WriteSetOfParticles and the Missing ExtraLabels (The Oier and Fede Adventures)
  • Handling nvidia drivers error message
  • improving deps installation
  • Improved the help message of more than 60 protocols

3.24.12.2 - Poseidon

• More scipion-em-xmipp
  • Updating version for pypi requirements
  • Bug cloning tag

3.24.06 - Oceanus

Merge pull request #798 from I2PC/agm-changelog

Update CHANGES.md

v3.23.11-Nereus

Merge pull request #749 from I2PC/release-3.23.11

Release 3.23.11 (Nereus)