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@albertmena albertmena commented Oct 8, 2025

Replace link to repo to the pypi name when release will be available micrograph-cleaner-em=0.X
PR in the plugin also required

To test it:

  • Checkout and pull repositories
  • Sowbnload model: ./xmipp getModels
  • remove enviroment rm -rf /.../miniconda3/envs/xmipp_MicCleaner
  • Install enviroment conda env create -f .../src/xmipp/bindings/python/envs_DLTK/xmipp_DLTK_v1.0-gpu.yml
  • Run the test: scipion3 tests xmipp3.tests.test_protocols_xmipp_mics.TestXmippDeepMicrographsCleaner

@albertmena albertmena changed the title Agm mic cleaner tf2 miccCleaner tf2 Oct 8, 2025
@albertmena albertmena requested a review from EduGitt October 9, 2025 11:32
@albertmena albertmena marked this pull request as ready for review October 9, 2025 11:36
@albertmena albertmena requested a review from oierlauzi October 14, 2025 11:21
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Test and commands run correctly. Conda command regarding installation of DeepLearningToolkit solved. MicCleaner Test runs correctly on different machines with different number of gpus: one with 4 and the other with 1.

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@albertmena albertmena merged commit 5fdba38 into devel Oct 20, 2025
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@albertmena albertmena deleted the agm_micCleaner_tf2 branch October 20, 2025 10:26
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3 participants